cbsteen
commented
2 months ago Thank you for your interest in EcoTyper. Sorry for the late response. Were your running EcoTyper locally on your computer? Perhaps there was something else running at the same time that prevented from opening the files.
In tutorial 1, when I ran Rscript EcoTyper_recovery_bulk.R -d Carcinoma -m example_data/bulk_lung_data.txt -a example_data/bulk_lung_annotation.txt -c Tissue -o RecoveryOutput It showed the following error information:
Running cell state recovery on: Dendritic.cells... Running cell state recovery on: CD8.T.cells... Running cell state recovery on: Monocytes.and.Macrophages... Running cell state recovery on: PMNs... Running cell state recovery on: Fibroblasts... Running cell state recovery on: PCs... Running cell state recovery on: NK.cells... Running cell state recovery on: B.cells... Running cell state recovery on: Mast.cells... Running cell state recovery on: CD4.T.cells... 错误: R: UnableToOpenBlob
/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpWdGPuG/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129d95228a66f.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//Rtmpiuu9g2/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129dd2b2751ee.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpNTFqPU/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129e55a7338a8.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpqyP5vd/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129db42cbad3e.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpSgmAJn/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129e21d00a93e.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpOam5U8/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129d7605271e2.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpEioSJy/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129d5395ea066.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 Running cell state recovery on: Epithelial.cells... Running cell state recovery on: Endothelial.cells... 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpwaPriA/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129e37560e85f.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//Rtmp1xNaJX/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129df252b2a93.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpEOf476/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_1129e6780f1b31.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpQN2n46/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_112a7c4c0f3b6d.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 错误: R: UnableToOpenBlob/var/folders/1z/bp5tmh3j14n4wdqghk64wcg00000gn/T//RtmpSDydw8/.heatmap_body_8e298dcba81b6519e384a7170581a0ad_1_112a77239774a3.png': No such file or directory @ error/blob.c/OpenBlob/2960 停止执行 Error in RunJobQueue() : EcoTyper failed. Please check the error message above! 停止执行How to solve it? I need your help. Thanks !