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digitalcytometry / ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
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Can EcoTyper be used in murine tumor analysis? #96

Open Lewisen-Liu opened 1 month ago

Lewisen-Liu commented 1 month ago

Hi Team,

I'm trying to analyze the murine tumor immune microenvironment. Do you think EcoTyper is feasible to be applied in mice RNAseq data? Or after converting the murine genes to corresponding human genes, although some would not be matched, could we still use the same method?

Thanks in advance! Lewisen