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digitalcytometry / ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
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genes used in input file #59

Closed mao223 closed 1 year ago

mao223 commented 1 year ago

Good day, I was wondering if you had the corresponding ensembl IDs for the genes used in the input expression matrix?

BALuca commented 1 year ago

Hello,

If you are referring to EcoTyper carcinoma input expression matrix, you can match the gene symbols to gene IDs using Gencode v24 annotations: https://www.gencodegenes.org/human/release_24.html.

Best, The EcoTyper team