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digitalcytometry / ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
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Error: failed to create symbolic link 'datasets/bulk/bulk_lung_data/data.txt': Operation not permitted #72

Closed wanglu2014 closed 1 year ago

wanglu2014 commented 1 year ago

Rscript EcoTyper_recovery_bulk.R -d Carcinoma -m /media/sf_transQiime/ecotyper-master/example_data/bulk_lung_data.txt -a /media/sf_transQiime/ecotyper-master/example_data/bulk_lung_annotation.txt -c Tissue -o RecoveryOutput2 ln: failed to create symbolic link 'datasets/bulk/bulk_lung_data/data.txt': Operation not permitted ln: failed to create symbolic link 'datasets/bulk/bulk_lung_data/annotation.txt': Operation not permitted Running cell state recovery on: CD4.T.cells... Running cell state recovery on: Monocytes.and.Macrophages... Running cell state recovery on: Dendritic.cells... Running cell state recovery on: CD8.T.cells... Running cell state recovery on: PMNs... Running cell state recovery on: NK.cells... Running cell state recovery on: Mast.cells... Running cell state recovery on: Fibroblasts... Running cell state recovery on: B.cells... Running cell state recovery on: PCs...

This is my code. I have check whether bulk_lung_data.txt and bulk_lung_annotation.txt existed in /example_data/. And I have tried to create data.txt and annotation.txt in /media/sf_transQiime/ecotyper-master/datasets/bulk/bulk_lung_data/, then get the same error.

BALuca commented 1 year ago

Hello,

It seems that you do not have permissions to write in the folder containing EcoTyper (/media/sf_transQiime/ecotyper-master). We would recommend checking that with your system administrator.