-
Hello,
I noticed a following message in the output .log file while executing _evidence_modeler.pl_. Although, the output (evm.out) is generated, but curious if this message is something to be concern…
-
Hello,
I have all files and run the program in the directory of the perl script. However, I can't successfully run as I get the following errors with multiple test runs
```
~/miniconda/bin…
-
The GFF sort and regenerate script is now fixed so that mRNAs should be properly produced. But, the vast vast majority of our gene models are CDS only. In other words, the mRNA equals the CDS and th…
-
All the pep files are result of Transdecoder, then I clean the id of the sequence. But when I run the script, all the files of SigleGene are empty files. Why the issue happened? Whether there is a sp…
-
It looks like this confusing parameter is often misused. See https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty833/5106166
-
Hello!
I'm new to using Trinity! My goal is to obtain the translated protein sequence of a specific gene. My organism is non-model but does have a genome, so I used the reference-based assembly. Af…
-
either add to http://www.commonwl.org/user_guide/15-staging/ or create a new lesson
-
I'm also trying to compare the Olympia oyster transcriptome to my proteome. Is the sequence of steps something along the lines of...
Create a nucl database with the Oly transcriptome fasta file
Us…
-
Hi, I have encountered an issue that might be related to this other recently opened issue ( #65). I saw the note in the documentation about the [entap_config.ini](https://entap.readthedocs.io/en/lates…
dence updated
3 months ago
-
Hi Brian
We recently stumbled across the following EVM result. Initially, some genes seemed to be missing from our analysis. In the public NCBI annotation, these genes were still present. After exa…