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just a thought, but would it makes more sense to allow render function to allow verlet to be much deeper. easier in some respects, since it would go in the same way that most kha things go?
just a th…
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The [online documentation](http://docs.openmm.org/latest/api-c++/generated/OpenMM.Context.html) for `Context::applyConstraints()` could be clearer in a few respects. I have been working on code that m…
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**Is your feature request related to a problem? Please describe.**
Basically all neighbor lists are built using `push_back`. This is bad as it costs insane amounts of performance.
**Describe the …
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Hi
I wanted to inform you that a similar implementation of NHC and Verlet adjoint equations can be found at this GitHub repository: https://github.com/torchmd/mdgrad/blob/cea2332e0ae2c90e2d8caa656c…
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The inertialess traces consist of two parts, an Euler integrator for the position and the LB coupling. Neither one is a virtual site mechanism. The two parts should be separated, and
can be used inde…
fweik updated
3 months ago
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machine-PIPL01
windows version- TEST_V2_3
Out of 3 combinations, both complexes excluding the APO complex threw errors in MD. Both of the jobs also could not be completed and stayed stuck at 95% a…
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- collision
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1. Lift the middle ball up and to the right, above the anchor point.
2. When you let go, the simulation begins, so wait for the ball to come back to about the same point where you just dropped it, th…
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the `set_output_archive_period` of protocols is broken.
Minimum Working Example
```python
from pyiron.project import Project
pr = Project("tmp")
pr.remove_jobs(recursive=True);
pr.get_repo…
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See https://github.com/Quenty/NevermoreEngine/blob/version2/Modules/Physics/Spring.lua
This will let you decouple animations from a framerate.