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Extracting any archive on SDA created by our apps with `tar xvf` creates a directory with internals with original file paths.
```
zpool/xenium/temp/
zpool/xenium/temp/Xenium_V1_mouse_pup_outs.zi…
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Hi,
I am planning to apply PRECAST to our internal 10x Xenium data (breast cancer tissue sections for 4 different patients).
I am wondering if I need to set up parameters when I create an PR…
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### Description of feature
# Description
https://qupath.github.io/
https://www.10xgenomics.com/support/software/xenium-explorer/latest/tutorials/xe-image-file-conversion
Can we implement this?
heylf updated
2 months ago
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"Genome Browser" - This field is only relevant in CMG / Xenium applications.
Options:
After merging bioloop commit to remove genome_browser into Xenium, apply a reverse commit to bring back the ge…
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I integrated two Xenium sections and ran `ImageDimPlot(..., split.by = 'sample')` but it shows only the first section. How do I make it show both? Same problem with ImageFeaturePlot (it emit an error …
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Hi,
sq.gr.ripley() cost too much memory (600G) when analysing large datasets (such as xenium, up to 250,000 cells). The memory was exhausted and the analysis was interrupted.
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Dear Developer,
I'm trying to use the sopa to output the xenium file, so I can open it with xenium.
but I got the error said no cell circles, I actually have this one in my spatialdata (pelase c…
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Hi,
I've been exploring your repository and noticed that you've successfully used Xenium datasets in your library. I'm currently working with similar Xenium files and am interested in replicating y…
jw235 updated
5 months ago
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When using `stamp_it` as the reclamation policy in a `vyukov_hash_map` or a `harris_michael_list_based_set`, this warning pops up when compiling with gcc-12:
```
In member function ‘bool std::atomic…
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Since Xenium does not capture the entire transcriptome, mitochondrial gene counts are not measured and cannot be used for quality control. So in order to perform QC on the data, we were wondering what…