issues
search
feiyoung
/
PRECAST
an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batch effects.
GNU General Public License v3.0
9
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
why use aligned embeddings for downstream analyses?
#27
abraham-abin13
opened
2 weeks ago
0
Discrepancy in PRECAST output based on setting different random seeds.
#26
prashanthi-ravichandran
opened
1 month ago
1
FindMarker function does not work with precast object
#25
abraham-abin13
closed
2 weeks ago
2
applying psuedobulk
#24
abraham-abin13
closed
1 month ago
1
where can I find the PRECAST corrected gene expression data?
#23
abraham-abin13
closed
1 month ago
1
3D Functionality in Precast
#22
MoussaKassim
opened
3 months ago
3
Is it possible to provide a mannual annotation file for HCC dataset?
#21
JunjieXia14
opened
3 months ago
3
Request for additional description of PRECAST model in tutorial/manual
#20
jac-thom
closed
5 months ago
2
Error in ICM.EM(XList, q, K, AdjList = AdjList, beta_grid = beta_grid, : ncols of XList's components must be the same!
#19
1667857557
opened
9 months ago
1
Error while trying to convert SeuratObj to Anndata
#18
jovanakalamkovic99
closed
10 months ago
1
[documentation] Clarification on parallel computing
#17
boyiguo1
closed
10 months ago
2
Prepare for upcoming Seurat v5 release
#16
Gesmira
opened
1 year ago
0
Applying PRECAST to 10x Xenium data
#15
joonlee3
opened
1 year ago
1
Regarding the questions about normalization and integration of gene expression matrices
#14
liuxq000
opened
1 year ago
4
Failed to reproduce the DLPFC analysis results
#13
Junjun1919
opened
1 year ago
12
Possible Incompatiblity with Seurat V5
#12
boyiguo1
closed
1 year ago
2
How to setup with multiple samples per condition
#11
ChangqingW
opened
1 year ago
5
Error when running IntegrateSpaData
#10
agelber-ucsd
closed
1 year ago
2
Request for guidance on improving clustering of matched tumor samples using PRECAST tool
#9
AteeqMKhaliq
closed
1 year ago
7
Parameter choices when some slices are missing regions at edges of slide
#8
agelber-ucsd
closed
1 year ago
1
Error when fitting PRECAST
#7
utule
closed
1 year ago
2
A question about Domains
#6
spatialbiology1
closed
1 year ago
5
error when running IntegrateSpaData with specific HK genes
#5
yiranzhimo
closed
1 year ago
1
Error when runing CreatePRECASTObject()
#4
yunbokai
closed
1 year ago
3
Increasing gene.number in CreatePRECASTObject
#3
anvaly
closed
1 year ago
2
PRECAST IntegrateSpaData errors
#2
anvaly
closed
1 year ago
2
Run PRECAST with SpatialExperiment
#1
boyiguo1
closed
2 years ago
2