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Running Kernel 5.9.1 on openSUSE Tumbleweed on a Core i7-8850H laptop.
Version of CoreFreq: clone of the master branch on October 28th.
If (and only if) the corefreqk module is loaded, if if I sus…
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**Bug Description**
`q2cwl template conda` fails to generate cwl for qiime2.plugins.sample_classifier.visualizers.confusion_matrix
**Steps to reproduce the behavior**
```
535 wget https://dat…
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## Workflow Template
The workflow template is a cookiecutter template:
```
- doc
- test
- {{Package name}}
- workflow.py
- spec.yml
```
`workflow.py` is the entry point of the workfl…
puorc updated
4 years ago
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## Describe the bug
A clear and concise description.
## Details
*Please verify and redact the details.*
**Renku version:** 0.10.2
**OS:** Linux (#1 SMP Wed Jul 10 08:46:17 EDT 2019)
**Python…
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For example, a workflow might be written in CWL draft-3 vs v1.0. And WDL also has versions.
Instead of relying on knowledge of the language, we should expose a property that simply indicates what vers…
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Need to be able to pass extra parameters down to installation command. An example of this is Toil:
https://toil.readthedocs.io/en/latest/gettingStarted/install.html#extras
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## Description
I was trying to do some work on the subscriber side of the pubsub information model but i wasn't able to invoke a few method calls, since the data i received wasn't usable.
I ho…
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Hello, bcbio developers and users!
Thanks for the great pipeline!
I've read in the history that it is now possible to use vcfanno in RNA-seq analysis.
When trying this:
```
details:
- algori…
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Expand workflow example to calculate wind speed using a function tree.
Example 1: JSON file could look like:
```
{
"notes": [
"def add(a, b): return a + b",
"math.pow(add(math.pow…
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Dear All:
As you may know, BioContainers is implementing the Ga4Gh API. We have well organized tools and their corresponding containers. We would like to extend some of the definitions of the curren…