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**Submitting author:** @jessdtate (Jess Tate)
**Repository:** https://github.com/SCIInstitute/UncertainSCI
**Branch with paper.md** (empty if default branch):
**Version:** v1.0
**Editor:** @kellyrowl…
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Is there a way to do a _in-silico_ digestion in Nucleic acid search engine with a terminal 3'-OH instead of a p?
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**Describe the bug**
Looking at WGS tumor / normal case "notedshark", SV calls are disappearing during the "vep_somatic_sv" rule.
The number of variants in the vcf-files before and after is diffe…
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This link in the main page is broken
... generating the in silico Hi-C maps can be found **[here]**(https://github.com/junioreif/OpenMiChroM/blob/Tutorials/Tutorial_Single_Chromosome.html)
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### Description
As reported in https://github.com/vector-im/element-web/issues/24616 (see "2. When the notification panels shows some old outdated notifications"), `/notifications` appears to be re…
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* summarize manuscript
* inquire about appropriate scope w/ plants in silico
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### Steps to reproduce
I'm encountering multiple issues with the notification panel which is making it impossible to see the latest mentions. This is in a public unencrypted room so the messages sh…
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Thanks for creating this useful [online tool](https://www.biosino.org/EpiDISH/) alongside this package. It seems that in the dropdown menu where one selects a reference, there are 17 individual type…
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**Is your feature request related to a problem? Please describe.**
I had initially asked to return variants (as an example) without a CADD score when returning variants with CADD score >X, as not all…
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Hi Xiaojie,
Could you show me how to set the "cell" parameter so I can do In silico perturbation in selected cell populations (for example, cluster1)?
Thanks!