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Dear Professor,
I am a first-year Ph.D. student, I read your paper "Learning consistent subcellular landmarks to quantify changes in multiplexed protein maps" carefully. But my research direction i…
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It looks like FASTP is not able to detect *automatically* the adapter at all for miRNA-seq data.
For example, FASTP is not able to detect *automatically* the adapter in the SE FASTQ file from https…
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**What is this request referring to?**
GO has a grouping term for regulatory non-coding RNAs: lnc, miRNA, piRNA, siRNA
Would SO consider creating an equivalent term?
**What is the name you would…
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Dear authors,
I am running the scCDC (latest version), following your tutorial here https://htmlpreview.github.io/?https://github.com/ZJU-UoE-CCW-LAB/scCDC/blob/main/inst/doc/scCDC.html . I succeed…
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- EXP annotations to this term are here:
https://docs.google.com/spreadsheets/d/17UgKKsxtQveZW9o5cvqlaNpGS5Zx2ymZVkdW9vZjzxc/edit#gid=0
(Edited to make clearer):
GO:0006351 transcription, DNA-…
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Hi, I am working with Nanopore direct-RNA sequencing and found your tools really useful. However, while I was trying to use your BamSlam script to generate some summaries and figures for the alignment…
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carbon catabolite repression of transcription from RNA polymerase II promoter by glucose (GO:0000433)
**Which term do you propose this term merge into? Provide GO ID and term label**
GO:0000122 …
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Hello,
First of all, thank you for developing such a powerful and intuitive tool.
**Describe the bug**
According to the documentation, the RNA count input for the SCENIC+ pipeline should consi…
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Hi, I would like to use a different storage / external hard drive to store data from the analysis using the RNA detector. In that, my internal memory isn't large enough. I am unable to do this and I w…