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The CameraWithLocation code is pretty much ready for testing with some hardware :) Someone in Cambridge probably ought to do this...
rwb27 updated
4 years ago
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**Environment:**
- aws-parallelcluster-2.4.0
- OS: centos7
- Scheduler: SGE
- Master instance type: t3.small
- Compute instance type: t3.small
**Configuration**
```
[cluster test]
ke…
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**Is your feature request related to a problem? Please describe.**
An output is not marked as outdated if script dependencies have changed.
**Describe the solution you'd like**
Detect dependencies …
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After setting up the new system all basic genome indices, such as _hg19_, _hg38_, _mm10_, etc, should be available by default.
To solve this problem, it's worth submitting the following jobs to be …
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Ran a workflow using V40 Cromwell on AWSBATCH that had as outputs (one outputfile.vcf for each of the shards in the workflow):
```
output {
Array[File] outputs = task.outputvcf
}
```
I u…
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## Expected Behavior
Output files should end up in the invocation directory when a workflow (docker based) is [run as a module](https://github.com/common-workflow-language/cwltool#import-as-a-module)…
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Great to see all the CWL integration!
One tweak for the autogenerated CWL: I think you're putting the version of the tool release in a top level filed named `version`, yes?
https://github.com/CB…
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Hello,
I'm noticing some errors when running joint calling with multiple variant callers and ensemble mode. The input files are the same as here: https://github.com/bcbio/bcbio-nextgen/issues/2688#…
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As far as I guess, since cwl file only supports options inside braces (`{}`, `[]`, etc), commands that normally used without braces around their arguments and defines (mostly one of) their arguments a…
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