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This may seem annoying but output column naming needs some refactoring. For example:
![image](https://cloud.githubusercontent.com/assets/6215797/21454310/8755f670-c928-11e6-8ab1-7a1f2ae24b50.png)
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I used the command "mixcr-2.0.2/mixcr align --report sample_align.log --species mmu --threads 18 sample.R1.fastq sample.R2.fastq sample.vdjca ".
sample.vdjca was successfully generated. However, "…
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Hello,
We just updated to Mixcr 2.0.2, and are seeing an NPE when running assemblePartial. It seems to have something to do w/ either not lacking any TRB hits, or our custom library. See the comm…
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I am testing the MixCR program (v1.3) and I have found an unusual situation when running 'exportAlignments'. The problem I have noticed is that the order in which sequences are provided in a FASTA or …
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-nFeature, -nMutations exporting blanks or '-' during exportClones.
Unable to export nt sequence for any gene feature other than CDR3. Alignment was performed with new release. vIdentityPercent sti…
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hello,
i am interesting in comparing the internal human DB used in MiXCR to another species. i did not see anything in the docs describing how to export from the internal DB to any sort of text form…
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From this letter:
_Oh well. One more question about the mutations: these are interpretable as SHM, right? Assuming there is not sequencing/pcr error, so NGS being completely error-free, then these mu…
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```
➜ mixcr_trb git:(master) ✗ ls
test.fastq
➜ mixcr_trb git:(master) ✗ ~/app/mixcr-2.0.1/mixcr align --chains TRB test.fastq test.vdjca
Reference library: repseqio.v1.1:9606 (1353156c3504ab36ef…