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milaboratory
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mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
https://mixcr.com
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Mixcr built in reference
#1858
pbpayal
opened
13 hours ago
0
Regression tests changes in the develop
#1857
github-actions[bot]
opened
18 hours ago
0
Regression tests changes in the develop
#1856
github-actions[bot]
closed
18 hours ago
0
picocli.CommandLine$ExecutionException: Error while running command refineTagsAndSort java.lang.IllegalArgumentException: input file has no tags mixcr/4.7.0
#1854
singhd6
closed
1 week ago
4
Duplicates of found alleles
#1853
Thopic
opened
1 week ago
2
Postanalysis summary statistics not fully reproducible manually
#1850
vincentwalter
opened
1 week ago
0
Persisting "Writing clones" during assemble
#1847
lordim
closed
2 weeks ago
5
Regression tests changes in the exports-for-trees
#1845
github-actions[bot]
closed
3 weeks ago
0
trees exports
#1844
gnefedev
closed
3 weeks ago
0
Regression tests changes in the bruker-mark
#1843
github-actions[bot]
closed
2 weeks ago
0
Regression tests changes in the bruker_v2
#1842
github-actions[bot]
closed
3 weeks ago
0
preset for bruker v2
#1841
Alex-Davydov
closed
2 weeks ago
0
Bulk BCR-seq using 10X VDJ Kit, How to run MiXCR pipeline...
#1840
whitebird01
closed
1 week ago
3
mixcr-mixcr analyze 10x-sc-xcr-vdj
#1837
whitebird01
closed
3 weeks ago
2
IndexOutOfBoundsException: Index 2 out of bounds for length 2
#1836
pursellta
closed
3 weeks ago
1
Error while running command align java.lang.RuntimeException: Different number of reads in single-readers.
#1834
pursellta
closed
4 weeks ago
3
IndexOutOfBoundsException during java running
#1833
omegahh
opened
1 month ago
4
Regression tests changes in the fixes
#1832
github-actions[bot]
closed
1 month ago
0
Regression tests changes in the fixes
#1831
github-actions[bot]
closed
1 month ago
0
Regression tests changes in the fixes
#1830
github-actions[bot]
closed
1 month ago
0
Fixes
#1829
gnefedev
closed
4 weeks ago
0
vBestIdentityPercent value NaN
#1828
kwuiee
closed
3 weeks ago
6
chore: fix pl-pkg name
#1827
mike-ainsel
closed
1 month ago
0
Fix typo in package name
#1826
DenKoren
closed
1 month ago
0
local preset
#1824
Dingchunyuan
closed
1 month ago
1
There are duplicates of found alleles when executing `findAlleles`
#1823
omegahh
closed
1 month ago
8
Postanalysis: preprocessing datasets progress unknown
#1822
Januaryyiyue
opened
1 month ago
5
Release to public npm
#1820
mike-ainsel
closed
1 month ago
0
picocli.CommandLine$ExecutionException: Error while running command align java.lang.RuntimeException: Failed to override some parameter.
#1819
Dingchunyuan
closed
1 month ago
1
mixcr assemble error with maxConsensuses=1
#1816
DMaspero
closed
1 month ago
6
Error : mixcr line 215: 20652 Killed $java -Dmi.license.file="$dir/mi.license" -D${app}.path="$dir" -D${app}.command=${app} "${javaArgs[@]}" -jar "$jar" "${appArgs[@]}"
#1815
liu9756
closed
1 month ago
6
Regression tests changes in the bruker-wip
#1812
github-actions[bot]
closed
1 month ago
0
changed bruker preset to species agnostic, added cell id barcode tran…
#1811
mizraelson
closed
1 month ago
0
exportAlignments ERROR
#1810
Z-YWJ
closed
1 month ago
12
Same barcode assigned to two different cellGroups in clones.tsv file from 10X TCR data
#1807
genome2020
closed
1 month ago
1
Regression tests changes in the fix-illumina-layout
#1806
github-actions[bot]
closed
1 month ago
0
Fixed Layout for presets
#1805
mizraelson
closed
1 month ago
0
Regression tests changes in the new-illumina-kit-dna
#1804
github-actions[bot]
closed
1 month ago
0
Regression tests changes in the new-illumina-kit-dna
#1803
github-actions[bot]
closed
1 month ago
0
- added new illumina preset
#1802
mizraelson
closed
1 month ago
0
new Qiagen kits
#1801
mizraelson
closed
1 month ago
0
Regression tests changes in the new-qiagen-kits
#1800
github-actions[bot]
closed
1 month ago
0
N bases
#1799
bshim181
closed
1 month ago
8
Multiple clones per cell barcode
#1794
SirKuikka
closed
2 months ago
1
Different alignment rates for MiXCR analyze and MiXCR align
#1793
Januaryyiyue
closed
2 months ago
1
Takara Smarter Seq
#1791
bshim181
closed
2 months ago
1
Regression tests changes in the align-retry
#1789
github-actions[bot]
closed
2 months ago
0
How to set up 'assembly-clonotypes-by' argument?
#1788
omegahh
closed
2 months ago
1
Discrepancies between sequencing runs
#1786
bshim181
closed
2 months ago
1
Alignment read counts by sample when using input file name expansion
#1783
benjytan88
closed
2 months ago
1
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