-
This is a small project that shows how to integrate Ilastik with Azure Batch. The idea is that user can just submit the computing job to Azure and download the results when the calculation is done. Az…
-
OutPut Message:
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
in ()
29 from mrcnn im…
-
Dear all,
Following up on my semantic segmentation project already discussed [here](https://github.com/rstudio/keras/issues/511) (Two classes semantic segmentation with U-Net) and [here](https://gi…
-
Hi,
Thank you very much for this wonderful software and easy to follow Jupyter notebooks.
I took some code from you and wrote a simple batch processing mode to read image data and write labelle…
-
### Before submitting an issue, please be sure to
- [ ] Read [the contributing instructions](https://ggirelli.github.io/gpseqc/contributing)
- [ ] Update to the latest version (run `git pull; sudo…
-
Dear all,
I am currently working on a semantic segmentation project. I am using U-Net as my encoder-decoder of choice, which looks like this:
`> summary(model)`
_________________________________…
-
**For which schema is a change/update being suggested?**
type/protocol/imaging/imaging_protocol.json
**What should the change/update be?**
This is an umbrella ticket covering a number of cha…
-
Add a flow for nucleic records which act very much like Synaptic Pair Study, linking to an existing Image Pair Study (which uses carefully chosen nuclei to align two images), and specifying nucleic re…
-
I running the example program for nuclei detection and running into issues with the API.
The API seems to have changed too as the names now differ from camel case to small case.
--------------…
-
I am unable to manually split objects in the "EditObjectsManually" mode (ie, edit my automatic nuclei segmentation to correct for when two nuclei are classified incorrectly as one). I can't manually …