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Hi, I have tested the repository for some months ago. I only have 2 different classes of tissues. I started to test the code with only 1 wsi per class. It runs without any inconvenience. Now, I have s…
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Does this package scale well to WSI of size 15k x 15k pixels and allows for non rigid registration to the level of aligning well close to individual cells? The tissues I'm working with not only shift …
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When I try to delete an annotation element, or a group of annotation elements, it seems that the server request uses the `PUT` endpoint (not the `DELETE` endpoint) and when I refresh the page and relo…
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Hi Wei,
I am a little bit confused about the input for '1_split.py'.
In the script you mentioned that all_wsi needs to include subfolders of images labeled by class. What do you mean by 'class' …
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When running `2.1) CNN Models - Model Training and Development.ipynb` on my Ubuntu 18.04 machine, in the 12th cell, I get the following error:
```
FileNotFoundError: Caught FileNotFoundError in Data…
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runfile('E:/Project_Sample/datbase/dread.py', wdir='E:/Project_Sample/datbase')
Traceback (most recent call last):
File "", line 1, in
runfile('E:/Project_Sample/datbase/dread.py', wdir='E…
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See:
https://github.com/scrapy-plugins/scrapy-splash/blob/master/scrapy_splash/middleware.py#L324
This line:
`body = json.dumps(args, ensure_ascii=False, sort_keys=True, indent=4)`
Breaks any …
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Unet was used for patch segmentation. After got the result for each patch, I would like to generate a mask image with the size as the same as whole side image.
Is there a function for that?
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I'm looking to create a scheduled job and have had no problem with the configuration in the past. Recently, I've had a problem with 'shipyard-jmtask' with nearly the same script (changes in environmen…
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Hi. I have been trying to host slides on S3 (through Girder's S3 assetstore) and it appears that HistomicsTK can load WSIs from S3. However, the speed is very low and loading tiles sometimes takes mor…