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The terminal shows "/usr/local/miniconda/lib/python3.5/site-packages/nipype/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed
warnings.warn('cmp not installed')" when I…
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```
[chrisgor@sherlock-ln04 login_node /oak/stanford/groups/russpold/data/ds000030_R1.0.3_preprocessed_0.4.4/freesurfer]$ ls -al
total 1088
drwxr-s---+ 268 chrisgor russpold 20480 May 9 13:07 .
d…
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We had trouble getting the MRIQC toolbox to work at our cluster computers. We figured it out, and here is what we did. First of all, we could only get it to work with Python 3. Furthermore, it seems t…
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Since working with relative paths (`../../../`) can be such a pain, we should investigate adding absolute import paths to the pipeline.
[This Gist](https://gist.github.com/branneman/8048520) outli…
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Hello,
I have been able to run mriqc on a workstation. I then moved on to install a copy on our server and I think I have followed the same steps. When I run
`
mriqc /run/media/MBIAL/MBIAL_STORAG…
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So I've built and rebuilt everything more than couple of times now and I keep getting this same error regardless of the mriqc or nipype build that I use:
```
mriqc ABIDEII-SDSU_1_BIDS ABIDEII-SDSU…
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I'm processing ds000009 and I noticed that hires is enabled. I was curious because it's an old dataset. However the resolution of the input data is:
```
pixdim1 0.999998
pixdim2 0.9…
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Using this command
docker run -i --rm -v /Users/andek/Research_projects/BIDSSPM/test/ds003:/bids_dataset -v /Users/andek/Research_projects/BIDSSPM/test/results:/outputs bids/spm /bids_dataset /outp…
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When running group-level analysis, after having ran participant level analyses independently, the derivatives directory used to search for json iqm files is the bids_dir rather than the out/derivative…