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BiGGId parsing was rewritten as the old method had shortcomings when parsing ids with a large amount of underscores and pseudoreaction ids were handled wrongly, i.e. they got an "R_" prefix added that…
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I submitted the BiGG projects again to update the biosimulations-bigg repo, which is tracking what the BiGG simulation runs. Several hours later 8 several runs are still running, 5, simulation failed,…
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Hi
I wonder why "c_i" is the only compartment of the model that is not a single letter?
**i** exists in BiGG (http://bigg.ucsd.edu/compartments/i) and could be used like this instead of c_i
Als…
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Larger sized Latex math brackets, such as \bigg, when embedded in markdown are converted into regular sized brackets when the conversion target is MS Word (.docx). This is not the same for PDF, which …
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Hi,
I'm having some pretty bad results when using MEMOTE over the GSMM I have drafted via CarveMe, not sure why.
I used Cobrapy validator over the models and got the following output, which I gu…
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Hello,
This might be a bit early to report an issue, however I am really interested in the construction of an enzyme constrained model for yeast using autopacmen. Even though I am not very familiar…
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Hello!
I was wondering whether cosmosR could be used on mouse datasets ? If yes, then the would the starting point for the construction of a mouse PKN be a Genome Scale Metabolic Network (for mous…
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Song Y, Ermon S. [Generative modeling by estimating gradients of the data distribution](https://proceedings.neurips.cc/paper/2019/file/3001ef257407d5a371a96dcd947c7d93-Paper.pdf).
Yang Song. [Generat…
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I noticed there was no LICENSE.md on this repo, which makes it very challenging for others to build off of safely.
This work looks *incredible*, and I (among many others) would love to be able to u…
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Project ownership is not being properly recorded with projects submitted with the BiGG auth0 application (client id and client secret). Likely a minor bug.