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saezlab
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cosmosR
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
https://saezlab.github.io/cosmosR/
GNU General Public License v3.0
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test
#39
adugourd
opened
3 months ago
0
Node names and annotations
#38
CatherM
opened
4 months ago
0
CBC version
#37
an-altosian
opened
4 months ago
4
Inquiry on Gene ID Handling and Recognition in COSMOS Analysis by PKN
#36
transform66
closed
2 months ago
7
added moon support functions
#35
adugourd
closed
6 months ago
0
Integrate Phosphoproteomics and transcriptomics studies
#34
Kriti1594
opened
8 months ago
0
Inclusion of inhibitory reactions in Recon and metabolite consumption
#33
narmadabc
closed
1 year ago
1
different Metabolite annotation in the PKN
#32
jtorrejon81
opened
1 year ago
1
Switching to Gurobi solver for running COSMOS
#31
SwagatikaSahoo2023
closed
4 months ago
3
Use of lipidomics data on Cosmos
#30
narmadabc
closed
1 year ago
3
error in Check Pertubations
#29
narmadabc
closed
1 year ago
7
Problem with knitr package
#28
SwagatikaSahoo2023
closed
1 year ago
3
0 length seeds protection
#27
adugourd
closed
1 year ago
0
remove bad seeds
#26
adugourd
closed
1 year ago
0
No solver
#25
adugourd
closed
1 year ago
0
No solver
#24
adugourd
closed
1 year ago
0
added no solver core functions
#23
adugourd
closed
1 year ago
1
Is it possible to run COSMOS without metabolic data?
#22
kaupuks
closed
1 year ago
2
metabolic IDs seem to be inconsistent
#21
gabora
closed
4 months ago
1
webpage: update to bootstrap 5
#20
deeenes
closed
2 years ago
0
Error while running COSMOS tutorial in R
#19
dilipgosar
closed
2 years ago
4
Running COSMOS with transcriptomics and phosphoproteomics
#18
Eirinits
closed
2 years ago
3
Saving results... Error in file(file, "rt") : cannot open the connection
#17
wmoldham
closed
2 years ago
15
New pkn
#16
gabora
closed
2 years ago
0
Problem running cosmos with toy datasets and cbc solver
#15
sarahbonnin
closed
2 years ago
7
made expression data optional
#14
adugourd
closed
2 years ago
0
cosmosR for mouse and PKN
#13
anu-bioinfo
closed
2 years ago
1
Conduct over representation analysis and highlight interesting pathways
#12
clohoff
closed
3 years ago
0
reverted vapply to sapply
#11
adugourd
closed
3 years ago
1
Small fix with installation section
#10
christianholland
closed
3 years ago
1
Automatically deploy pkgdown page to branch gh-page
#9
christianholland
closed
2 years ago
2
Getting more information on how to use COSMOS
#8
LonnekeNouwen
closed
3 years ago
8
Problem running BACKWARD run of COSMOS
#7
samuelbunga
closed
3 years ago
1
problem with preprocess_COSMOS_signaling_to_metabolism
#6
jytan01
closed
3 years ago
2
problem installing from github on windows
#5
adugourd
closed
3 years ago
1
cosmos with cosmos_data object
#4
gabora
closed
4 years ago
0
add utility functions to prepare input vectors
#3
martingarridorc
closed
4 years ago
5
Gh page
#2
christianholland
closed
4 years ago
1
Create LICENSE
#1
christianholland
closed
4 years ago
0