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I'm working on a prototype with ATSAMW25, the same one used on the MKR1000.
I use the SWD port connected to a Raspberry Pi with OpenOCD to load the bootloader (samd21_sam_ba_arduino_mkrzero.bin), and…
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First of all, what a great tool!
I have been unable to find any contact information @hannespetur, but would like to request a feature. Right now there are only a limited number of alleles available as…
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Hi,
I see the list of the references of the multiple sequence alignment here:
http://www.ebi.ac.uk/ipd/imgt/hla/nomenclature/alignments.html
May I ask are the alleles in this list part of the human re…
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I have the following environment set up in AWS:
Three Docker Hosts, located at:
docker-1A@Dublin, Public IP X.X.X.X
docker-2A@Dublin, Public IP Y.Y.Y.Y
docker-1B@Frankfurt, Public IP Z.Z.Z.Z
OS is U…
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Several samples in the 2 May 2016 run had over 1000 zerolength errors in the `g2p.csv` file. I looked at sample 71244A-HLA-B-PAAL0412-5-2-V3LOOP_S54, and found that there were two common sequences tha…
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[Peggs K, Verfuerth S, Pizzey A, Ainsworth J, Moss P, Mackinnon S. Characterization of human cytomegalovirus peptide-specific CD8(+) T-cell repertoire diversity following in vitro restimulation by ant…
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Dear Alexander,
Thank you for making this interesting program.
I meet this following error when I try to compile it:
...
In file included from readFilter/readFilter.cpp:8:0:
readFilter/readFilter.h:1…
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Hi Alex, how can I generate pseduo allele sequence from the reference graph and call variants based on the aligned reads?
I don't know how to interpret the allele clusters reported in R1_bestguess.txt…
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Hello,
I'm using `vg` to build a graph of the MHC region on chromosome 6. I constructed a graph using the [GRCh38 reference sequence](http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/GRC…
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In the 'alignments' folder A_gen.txt file, there are several lines contain " | " symbol, for example:
A_01:01:01:01 G | ATGGCCGTC ATGGCGCCCC GAACCCTCCT CCTGCTACTC TCGGGGGCCC TGGCCCTGAC CCAGACCTGG…