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Hello,
I ran mixcr and got the result files.
I wonder some result columns.. try to find its meaning but i don't find.
Here is my result.
Clone fraction | Clonal sequence quality(s) | A…
deryu updated
7 years ago
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#### System
java version 1.7.0_101
mixcr version 1.7.1
#### Commands
`usr/bin/java -Xmx15g -jar /path/to/mixcr-1.7.1/mixcr.jar align -f --loci TRB --species mmu --save-description --save-reads --rep…
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java version "1.8.0_121"
java(TM) SE Runtime Environment (build 1.8.0_121-b13)
java HotSpot(TM) 64-Bit Server VM (build 25.121-b13, mixed mode)
F:\MUX4446\2017_01_13_15_38_00_981\RMM592>java -Xmx…
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I used to use brew to install and update mixcr but found the update is slower than install manually. so I tried to install manually by following command,
> wget https://github.com/milaboratory/mi…
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Stack trace:
java.lang.NullPointerException
at com.milaboratory.mixcr.cli.ActionExportClones$CFilter.accept(ActionExportClones.java:108)
at com.milaboratory.mixcr.cli.ActionExportClon…
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mixcr align -OvParameters.geneFeatureToAlign=VGeneWithP input.fastq.gz output.vdjca
mixcr assemble output.vdjca output.clns
causes
Exception in thread "main" java.lang.IllegalArgu…
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Our BIOMED-2 protocol based BCR analysis shows Overlapped and not aligned: 1138271 (66%)
I would like to know what could potentially make the overlapped reads couldn't be aligned.
Thanks!
> ===…
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Dear developers,
Congratulation for great job. The tool is very good. I have small issue during exporting clones. I am not sure how to export mutations. I am doing analysis of data obtained using …
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Hey! I am super new to this here (and to most programming)
Can someone help me how to install the software on my mac? Ideally an explanation for computer dummies, I have no experience with using the …
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[MiXCR-test's documentation](http://files.milaboratory.com/mixcr/paper/mixcr-test_documentation_1.1.html) gave an example of exportSynth whereby the V, D and J segments were exported. However, even by…