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I have seen the following exit message on error:
Exception in thread "main" java.lang.StringIndexOutOfBoundsException: String index out of range: -1
at java.lang.String.charAt(String.java:658)
…
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The second compound that I will be attempting to synthesise is shown below. This belongs to the triazolopyridine series 4 compounds (OSM series 4 info - http://openwetware.org/wiki/OpenSourceMalaria:T…
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Dear @mjafin,
thank you for the tool, which is very helpful. However, I got stuck while splitting reads containing two or more `N` cigars:
```
18M2443N77M2449N5M TAGGGGCTCCCGCTGCAGCTCTTTCACTTCCACAAGA…
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The first target I will attempt to synthesise is compound 1, this belongs to the triazolopyridine series 4 compounds
( OSM series 4 info http://openwetware.org/wiki/OpenSourceMalaria:Triazolopyrazine…
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Proposal of 2 new terms and maybe some
obsolescences as well, relating to heterotrimeric
and small monomeric G proteins.
SGD had genes annotated to each of three terms
that recently went obsolete:
h…
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Proposal of 2 new terms and maybe some
obsolescences as well, relating to heterotrimeric
and small monomeric G proteins.
SGD had genes annotated to each of three terms
that recently went obsolete:
h…
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Hi,
I'm testing VarDict Java on bcbio-nextgen's integration test data and it's dying out on me likely due to edge cases:
```
Exception in thread "main" java.lang.NullPointerException
at com.a…
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Thanks for the work on the VarDict java port. The speed improvements are very
welcome, and I've been working on validating the latest version (1.2.1) against
the DREAM ICGC-TCGA challenge data used pr…
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I am running the variant2 pipeline for exon samples. Everything seemed to be running fine until some error messages popped up:
First I get lots of errors - I think it is during the vardict task.
```…