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`-nMutations JRegion -aaMutations JRegion`
produces the following exception
```
Exception in thread "main" java.lang.NullPointerException
at com.milaboratory.core.Range.contains(Range.java:169…
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5'RACE TCR with MiSeq PE300.
mixcr align --chains ALL --species hsa --parameters rna-seq -OallowPartialAlignments=true -OvParameters.geneFeatureToAlign=VTranscript \ --report alignmentReport.log co…
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hello,
I used MiXCR for Illumina PE data from human TCR. I have two questions about the result.
1. The two analysis results were not consistent with same command lines. I followed the tutorial from ur…
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Hi,
I am looking for more information on how to interpret the output of MIXCR especially in the context of using RNA-seq data. It would be useful to have more documentation describing the output. …
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This may seem annoying but output column naming needs some refactoring. For example:
![image](https://cloud.githubusercontent.com/assets/6215797/21454310/8755f670-c928-11e6-8ab1-7a1f2ae24b50.png)
…
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I used the command "mixcr-2.0.2/mixcr align --report sample_align.log --species mmu --threads 18 sample.R1.fastq sample.R2.fastq sample.vdjca ".
sample.vdjca was successfully generated. However, "…
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Hello,
We just updated to Mixcr 2.0.2, and are seeing an NPE when running assemblePartial. It seems to have something to do w/ either not lacking any TRB hits, or our custom library. See the comm…
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I am testing the MixCR program (v1.3) and I have found an unusual situation when running 'exportAlignments'. The problem I have noticed is that the order in which sequences are provided in a FASTA or …
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-nFeature, -nMutations exporting blanks or '-' during exportClones.
Unable to export nt sequence for any gene feature other than CDR3. Alignment was performed with new release. vIdentityPercent sti…