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https://mp.weixin.qq.com/s/CIKsm-1L7vk1hGpa1lDBZw
ixxmu updated
9 months ago
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### Data Owner Name
NIH - National Institute of Health
### What is your role related to the dataset
Data Preparer
### Data Owner Country/Region
United States
### Data Owner Industry
Life Scienc…
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I just downloaded this and tried the Sanger example which worked but this fails,
`./datasets --version
datasets version: 15.25.0
marchywka@happy:/home/ubuntu/dev/ncbi$ ./datasets summary genome…
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Hi,
I'm looking at sequence data downloaded from the NCBI SRA database. When running filterAndTrim I get he following error:
```
Error in (function (fn, fout, maxN = c(0, 0), truncQ = c(2, 2), tr…
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Hello,
I am attempting to use the command tool datasets.exe on Windows 64-bit to download raw sequencing data from the bioprojects
PRJNA648656 and PRJNA648656, both of which returns 'error: no…
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### Data Owner Name
National Library of Medicine (NLM)
### What is your role related to the dataset
Data Preparer
### Data Owner Country/Region
United States
### Data Owner Industry
Life Scienc…
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I found SalmonTE works well when I give it either R1 fastq or R2 fastq. But it gives error as below when I provide both:
![image](https://user-images.githubusercontent.com/34944811/40867954-69b27cb…
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Hi, I have installed the sratoolkit sticking to this instructions https://github.com/ncbi/sra-tools/wiki but it is 1. not downloading any files 2. nor creating any directories 3. and unfortunately al…
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### Data Owner Name
NIH - National Institute of Health
### What is your role related to the dataset
Data Preparer
### Data Owner Country/Region
United States
### Data Owner Industry
…
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Even though I'm working with pre-fetched files on our Lustre filesystem with plenty of I/O capacity, the `*-dump` commands take _forever_ to process a file. 12 hours and `fastq-dump` is not even 1/4 t…