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Hi all,
I have a question about the peak detection with the detect peak function. I was trying to plot the detection threshold on my data and visualize the detected peaks and that was my result:
…
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We need a dedicated env for MesoscopePreprocess that is distinct from DLC and ephys. Large jobs should be run in their respective envs.
k1o0 updated
4 months ago
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I'm currently having to dump to array to to sort and I don't think that is likely efficient. Some kind of sort and/or sortInPlace would be great for this library.
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Hello,
I am using SpikeInterface version 0.100.0 and I am using the sorter kilosort2 in the docker on Ubuntu (22.04.2 LTS). I launch the spike sorting with
```
sorting = si.run_sorter(sorter…
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hey guys,
so one of my labmates (I installed from source on her computer) ran into an issue during `sw.plot_unit_summary` trying to `get_data` from spike_amplitudes.
```python
Cell In[14], li…
zm711 updated
7 months ago
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I'm trying to fetch more than 100,000 rows for report generation.
I tried these approaches,
1. Recursive calls with 1,000 limit to fetch all rows
2. Using query.each() and push row in array
Both…
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I had some good luck with kilosort 4 on Spikeinterface last month but when I repeated the same analysis this month, spike sorting kept failing. My kilosort is 4.0.4 and my spikeinterface is 100.4 (hav…
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I get the below error when trying to delete from SortGroup.
Code:
```python
import spyglass.spikesorting.v0.spikesorting_recording as sgss
(sgss.SortGroup & {'nwb_file_name': 'J1620210529_.nwb',…
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## Status
**[2024-07-29] [Fran]** Amanda and Michelle weighed in after Daniel presented to options. The decision was made to go with the hard-coded option. Fran updated the ticket.
**[2024-07-25] […
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```bash
[dendro] Running job: 1b0ca739.e31f3a60
[dendro] Processor: spikeinterface_pipeline_mountainsort5
[dendro] Assembling context
[dendro] Input: input
[dendro] Output: output
[dendro] Param…