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#### Introduction
I am a new PhD Student at the Walter and Eliza Hall institute in Melbourne, Australia. My project is based around methods and tools for the analysis of DNA methylation in long reads…
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Hi,
This is a great tool!
I wanted to ask if it's possible to use a haplotype FASTA file instead of a VCF file？
Thanks a lot!
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>>
>> https://github.com/rmcolq/pandora/blob/815da22867f2bdaa3e3bf40f382be830c1506b0a/src/estimate_parameters.cpp#L217-L231
>>
>> In particular https://github.com/rmcolq/pandora/blob/815da22867f2…
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## New feature
We have had the `splitCSV` [operator](https://nextflow.io/docs/latest/operator.html#splitcsv) for a long time and it's commonly used. @vdauwera was asking me how to do the reverse - …
ewels updated
3 months ago
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Expected Behavior
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This request to add new genotype facilities comes from blueberry breeders at NCSU.
These are the name…
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Hello All,
I'm trying to use Viva, however I'm stuck.
I'm running:
` julia viva -f /data1/i7-97_filtered_snps_final.vcf -t Default_Options -s png`
and getting this error:
Loading VCF file…
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Hi,
I am trying to use PanGenie to genotype personalized minigraph-cactus graphs generated by `vg haplotypes`. In the [personalized pangenome paper](https://www.biorxiv.org/content/10.1101/2023.12.…
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### Change Type
Update
### Template to add or update
genotyping_human_assay
### RFC Link
https://docs.google.com/spreadsheets/d/1UqlfwepC-7Zc73g2UPm2zQh_O9FEKKOsBVWmKOQ6wzE/edit?usp=sharing
### …
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Hi, I am totally naive about Nexflow and singularities, so it might be a simple question but I couldn't find a solution around. I get the following error when running:
"nextflow run GraffiTE/main.n…
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Hi,
I am using Aldy v4.5 (Python 3.7.1 on Linux) to genotype Oxford Nanopore WGS data in phased BAM files. First I created a profile using one of my long read bam files without any CNVs or SVs in m…