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### Description of the bug
I ran `scdownstream` on the h5ad output of `nf-core/scrnaseq` using cellranger. `scdownstream` fails on celltypist giving this error:
`ValueError: 🛑 No features overlap …
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Hello,
I tried to reproduce the example you provided in: https://mojaveazure.github.io/seurat-disk/articles/convert-anndata.html#converting-from-anndata-to-seurat-via-h5seurat
```
> library(SeuratD…
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Dear Authos
I have converted my Seurat objects using the following code:
```
SaveH5Seurat(snRNA.out, filename = "./scBridge/snRNA.out.h5Seurat")
Convert("./scBridge/snRNA.out.h5Seurat", dest = "…
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Hi! Thanks for making this modified version. I was able to successfully install this version, but when I try using it in scanpy, i.e.:
```
adata = sc.read_h5ad("myadata.h5ad")
sc.pp.filter_genes(…
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Hi,
It is a fantastic method for analyzing spatial transcriptomics!
I tried to cluster DLPFC samples with SCGDL following the tutorial you present. I found the outcomes are quite different from …
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Hi all,
Thanks for your great works!
I want to know if H&E images in Xenium has been registered with cells coordinates. Because in the raw experiment they are not registered. 10x Xenium analysi…
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Hi,
Firstly, I'd like to commend the OV project for its contributions to scRNA analysis. I have a few suggestions that could potentially enhance its utility:
1. Flexibility in ov.pp.preprocess: …
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Hi,
I am unable to convert my h5ad object to h5seurat. I'd be grateful for any pointers about how to get this working. Here is the code I used:
```
library(Seurat)
library(SeuratDisk)
Convert…
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Hi guys,
Sorry I am new to github, I just posted this a comment on a closed thread (#530) and wasn't sure if that would be seen or not so I am just posting it up in as a new issue, just in case.
…
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Hi,
Thank you all the developers of `scIB` for the great package and also to suggest useful metrics to compare the performance of integration methods.
>WARNING: You may want to skip to the end…