mojaveazure seurat-disk issues

mojaveazure / seurat-disk

Interfaces for HDF5-based Single Cell File Formats

https://mojaveazure.github.io/seurat-disk

GNU General Public License v3.0

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issues

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Possible solution for converting categorical variable (factor) to proper text categoricals in H5AD

#183 mvfki opened 1 week ago
1
a perplexing error while converting H5AD to a Seurat object.

#182 TATABOX99 opened 2 weeks ago
0
error #000: ../../../src/H5D.c in H5Dvlen_reclaim(): line 732: invalid argument

#181 mayanbriller opened 2 months ago
0
Efficiently import gene expression values for a selected gene.

#180 le-raman opened 3 months ago
0
seurat-disk installation in r

#179 yulchen810 opened 3 months ago
0
Error in adding RNA assay

#178 eblchen opened 3 months ago
1
saves only the variable features

#177 SofyaMa opened 4 months ago
1
error:not a sparse matrix when converting h5ad to Seurat

#176 gmcregis opened 4 months ago
0
Error: 'H5ADToH5Seurat' is not an exported object from 'namespace:SeuratDisk'

#175 Flu09 opened 4 months ago
0
trouble converting SeuratObject to h5ad

#174 ncedi12 opened 4 months ago
1
Problem with loading a h5seurat file with LoadH5Seurat

#173 ghost opened 5 months ago
0
Creating a H5Seurat object error

#172 CeciPR opened 6 months ago
7
Error for LoadH5Seurat: Too many values for levels provided

#171 Biolz opened 6 months ago
2
Export to h5ad from BPCells based Seurat object

#170 royfrancis opened 7 months ago
0
Error while saving the h5seurat file from the Seurat object

#169 venkan closed 7 months ago
6
Error in SaveH5Seurat() : HDF5-API Errors

#168 ys910111 opened 8 months ago
1
H5AD Improvements

#167 mojaveazure closed 8 months ago
0
Error: Unknown file type: h5seurat

#166 aodainic7 opened 8 months ago
6
SeuratDisk install

#165 SaharBJ opened 9 months ago
0
Seurat Object not closing when using SaveH5Seurat

#164 pshukla63 opened 9 months ago
1
Scaling after conversion from anndata to seurat object

#163 pmarzano97 opened 10 months ago
0
Error when converting h5Seurat to h5ad

#162 zoan128 opened 10 months ago
11
Only a subset of scaled data available in .X

#161 tessadgreen opened 11 months ago
0
Export all reductions in h5ad

#160 bellenger-l opened 11 months ago
0
Error: "Failed to install 'unknown package' from GitHub: Timeout was reached" while installing SeuratDisk, R version 4.1.1, Platform: x86_64-w64-mingw32/x64 (64-bit)

#159 aanu28 opened 11 months ago
2
error in curl::curl_download() step:Failed to open file pbmc3k_final.h5ad.curltmp.

#158 Sophia409 opened 11 months ago
0
Error in converting h5ad to h5Seurat Error: (converted from warning) Unknown file type: h5ad

#157 Sophia409 opened 11 months ago
1
LoadH5Seurat no longer working for me

#156 ccnawrocki closed 5 months ago
7
How do i download a older version of SeuratDisk

#155 tushar-dhyani-elucidata opened 1 year ago
0
Error when saving Seurat to H5Seurat file with latest Seurat Version

#154 ShanshanHe-44 opened 1 year ago
4
Error Loading Visium H5Seurat

#153 BenjaminDEMAILLE opened 1 year ago
0
Error when saving a Visium Seurat to H5Seurat

#152 BenjaminDEMAILLE opened 1 year ago
2
Error: Attempting to add a different number of cells and/or features

#151 sarahbonnin opened 1 year ago
0
Matrix type mismatch when using LoadH5Seurat()

#150 hlmtran opened 1 year ago
1
HDF5-API Errors: error #000: H5Ocopy.c in H5Ocopy(): line 240: unable to copy object

#149 catsargent opened 1 year ago
1
error Convert("test.h5seurat", dest = "h5ad", overwrite = TRUE)

#148 wang0430 opened 1 year ago
0
Error in saveh5seurat after upgrading to Seurat v5

#147 KristinAass opened 1 year ago
16
Error in self$exists(name) : HDF5-API Errors:

#146 imerelli opened 1 year ago
0
Incompatability with latest version of anndata

#145 LinearParadox opened 1 year ago
0
Converting .rds (spatial transcriptomics) to anndata.

#144 bogdan-bios opened 1 year ago
1
Another issue with h5ad -> h5seurat

#143 bennjmo closed 1 year ago
1
AnnData to h5seurat not working via rpy2/jupyter notebook

#142 jesswhitts opened 1 year ago
0
Problem with LoadH5Seurat

#141 ydai3 opened 1 year ago
16
Merging two .h5seurat files containing ATAC assays renders them unsaveable using SaveH5Seurat

#140 volkansevim opened 1 year ago
0
Issues converting Anndata to h5seurat object

#139 sarakn97 opened 1 year ago
1
cell type annotation in metadata disappear

#138 joe-jhou2 opened 1 year ago
3
Converting from .h5Seurat to h5ad messes up observational metadata

#137 pakiessling opened 1 year ago
1
Error in source[["var"]][[mf]]$read() : attempt to apply non-function

#136 scauzhaos opened 1 year ago
7
RStudio Crashes with LoadH5Seurat()

#135 sarakn97 closed 1 year ago
1
Error in if (!all(cur_arg > 0)) { : missing value where TRUE/FALSE needed

#134 denvercal1234GitHub opened 1 year ago
6