mojaveazure seurat-disk issues

mojaveazure / seurat-disk

Interfaces for HDF5-based Single Cell File Formats

https://mojaveazure.github.io/seurat-disk

GNU General Public License v3.0

155 stars 49 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

RStudio Crashes with LoadH5Seurat()

#135 sarakn97 closed 1 year ago
1
Error in if (!all(cur_arg > 0)) { : missing value where TRUE/FALSE needed

#134 denvercal1234GitHub opened 2 years ago
6
Error when opening loom file generated by as.loom()

#133 MartaBenegas opened 2 years ago
0
Issues when subsetting and converting loom to seurat

#132 HenriettaHolze opened 2 years ago
5
Some questions about missing files in seuratdisk

#131 HelloWorldLTY opened 2 years ago
0
Suggestion: Append to h5Seurat file

#130 Alkhawaja95 opened 2 years ago
0
Trying to convert h5ad file to h5seurat and producing file in directory but cannot open

#129 mwu2001 opened 2 years ago
2
How could I convert a 'dgCmatrix' into '.h5' file?

#128 jiangpuxuan opened 2 years ago
0
Conversion scrambles barcodes w/r/t metadata columns

#127 aseyedia closed 2 years ago
3
Convert H5Seurat to AnnDisk failure when metadata col has all NA

#126 bbimber opened 2 years ago
0
Error: Missing required datasets 'levels' and 'values'

#125 pmarzano97 opened 2 years ago
3
I tried to convert from a HD5ad file to h5seurat using convert function in seurat-disk package, but it failed with this error message "Error: Cannot find feature names in this H5AD file"

#124 peralesvilchezl opened 2 years ago
1
Error converting Tabula Sapiens h5ad files to h5seurat

#122 taylordm opened 2 years ago
10
Error saving a Seurat object

#121 msherafatian opened 2 years ago
0
Convert a scATAC data into h5Seurat

#120 emanuelavilla opened 2 years ago
0
Source package available?

#119 michailk1982 closed 2 years ago
1
Error in Loadh5Seurat

#118 kguion1 opened 2 years ago
2
`SparseWrite()` is now unavailable

#117 shitiezhu opened 2 years ago
0
Cannot re-install `seurat-disk`

#116 RuiyuRayWang closed 2 years ago
1
Conversion from h5Seurat to h5ad not preserving gene names

#115 shahrozeabbas opened 2 years ago
2
SeuratDisk unavailable in R-Studio-Server

#114 mar98trian opened 2 years ago
0
Error reading h5seurat file

#113 giorgiatosoni opened 2 years ago
0
SaveH5Seurat output lacks UMAP slot

#112 rhodesch closed 1 year ago
0
Error in Graphs(object = x) : could not find function "Graphs"

#111 parkjooyoung99 opened 2 years ago
3
Fix saving and loading of named vectors

#110 timoast closed 2 years ago
0
Error: Missing required datasets 'levels' and 'values'

#109 Diennguyen8290 opened 2 years ago
42
Error in `Convert()` an `.h5Seurat` object into `.h5ad`.

#108 jiangpuxuan opened 2 years ago
1
anndata to seurat not working with scVI processed data

#107 bjstewart1 opened 2 years ago
0
Set encoding-type and encoding-version for 'var' in exported AnnData

#106 bbimber closed 2 years ago
2
Exported AnnData lacks genes in the rownames (at least when read by python)

#105 bbimber closed 2 years ago
7
error saving updated Seurat (2.X -> 3.X) object

#104 dtenenba opened 2 years ago
1
Is this package usable?

#103 pati-ni opened 2 years ago
0
Missing meidum_umi in SCTModel obj - backward compatibility

#102 simoncmo opened 2 years ago
5
R object of all column names of a Loom file

#101 alexandruioanvoda opened 2 years ago
0
Error when convert H5ad to seurat object

#100 GouQiao opened 2 years ago
7
how to convert h5Seurat to h5ad for large object

#99 FADHLyemen opened 2 years ago
0
install on R version 3.6.0

#98 DUAN-GAO opened 2 years ago
0
Vector names dropped when loading from h5Seurat

#97 timoast closed 2 years ago
0
Problem with Convert() from h5ad to h5seurat

#96 Pazuzzilla opened 3 years ago
2
problems with feature names in conversion of Seurat to AnnData

#95 orrzor closed 3 years ago
2
Error while using WriteH5Group() function

#94 SaranjeetKaur opened 3 years ago
0
Error: Cannot find feature names dataset at row_attrs/Gene

#93 dm8000 opened 3 years ago
6
Convert() fails on AnnData at metadata conversion step

#92 dnjst opened 3 years ago
1
Have trouble saving H5Seurat files

#91 sadiyarsh opened 3 years ago
0
Error in Convert

#90 l-magnificence opened 3 years ago
0
Error in UseMethod DefaultAssay

#89 nehad-procogia opened 3 years ago
1
C stack usage error during SaveH5Seurat call

#88 alexthiery closed 3 years ago
1
Convert all expression data

#87 yjgeno opened 3 years ago
0
Error: 'Images' is not an exported object from 'namespace:Seurat'

#86 gt7901b opened 3 years ago
0
Lost `Dimnames` for misc sparse matrix

#85 GreenGilad opened 3 years ago
0

Previous Next