-
``````
```
``````
- 1. What does this package do?
An interface to the web service methods provided by the
United States Department of Agriculture (USDA). The
Agricultural Research Serv…
-
Hey @wrightaprilm,
What references do you think we need for the PF2 morphology methods and models.
E.g. if someone runs kmeans on morphology with PF2, right now I ask them to cite:
PF2
RAxML
Paul'…
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Hi LightGraphs people. I'm a maintainer of the BioJulia org and am building the Phylogenetics module for BioJulia/Bio.jl.
Up until now I've been building the phylogenetic types with a linked-node li…
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This is likely due to my deep ignorance of flow's architecture, but `vagrant up` gives me this error:
`fatal: [flow]: FAILED! => {"changed": false, "failed": true, "invocation": {"module_args": {"all…
-
TL;DR - Is anything preventing us from supporting CIGAR Pad operations right now?
In my line of work, alignments with software like Clustal generate reference-less alignments. E.g.
> Seq1
> CGATCA--…
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Do we want the same fields as the current oti, or any added / deleted? Example of current oti returns:
`
{
"matched_studies" : [ {
"ot:studyPublicationReference" : "Tippery N., & Les D. 2011. P…
-
Hello,
Could some documentation for generate_trees be added under the detailed documentation section in the manual? I'm uncertain as to what options to specify out of all the command line options tha…
-
e.g. http://biopython.org/wiki/Documentation.html and http://biopython.org/wiki/Publications used a PubMed plugin under MediaWiki
-
```
> using MacroTools
ERROR: LoadError: LoadError: UndefVarError: readstring not defined
in include at /usr/local/lib/julia/sys.dylib
in include_from_node1 at /usr/local/lib/julia/sys.dylib
in inc…
-
I was wondering if there was any particular reason for the checks in phydms that the preferences file be numbered starting with "1" (line 333 of `phydms`):
`if not (min(sites) == 1 and max(sites) - m…