brettc partitionfinder issues

brettc / partitionfinder

PartitionFinder discovers optimal partitioning schemes for DNA sequences.

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issues

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Forever issue python 2.7 vs 3; missing tables in one and in "3.*" it just make even more issues

#139 StanleeKol closed 2 years ago
4
ERROR: Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file

#138 xiongqian123456789 opened 3 years ago
2
TIM model

#137 zcalamari closed 3 years ago
1
Running ~20 loci dataset

#136 aberaslop opened 4 years ago
1
Error about working directory via

#135 zhounan1356 opened 4 years ago
1
Error 522 to download anaconda

#134 glichtenstein opened 4 years ago
1
Link to the example dataset in the tutorial is broken

#133 joelnitta opened 5 years ago
0
PartitionFinderProtein error: Failed to run models ...; not sure why

#132 dongzhang0725 opened 5 years ago
0
user_tree_topology handling

#131 carloliveros opened 5 years ago
0
--rcluster-max default

#130 carloliveros closed 5 years ago
1
partitionfinder error on WIN7 32 bit

#129 dongzhang0725 closed 5 years ago
2
Manual in Chinese

#128 roblanf opened 6 years ago
0
HDF5 error

#127 roblanf opened 6 years ago
1
Buffer2

#126 roblanf closed 7 years ago
0
Fix: call scipy.misc.comb with exact=True

#125 hdetering closed 7 years ago
1
buffer size issue

#124 roblanf opened 7 years ago
10
remove DUMMY and DUMMY2 models

#123 roblanf closed 7 years ago
1
Move shell scripts into Makefile

#122 brettc closed 7 years ago
0
Add license to root.

#121 brettc closed 7 years ago
1
Manual in md

#120 alephreish opened 7 years ago
13
chunk tasks for analysis

#119 roblanf closed 7 years ago
0
some very minor changes

#118 roblanf closed 7 years ago
0
added a lightweight dependency checker

#117 roblanf closed 7 years ago
0
Feature/clean tiger

#116 roblanf closed 7 years ago
0
Feature/ml default tree

#115 roblanf closed 7 years ago
0
Feature/kmeans manyparts

#114 roblanf opened 8 years ago
1
Manual in md?

#113 alephreish closed 7 years ago
6
Script execution

#112 alephreish closed 7 years ago
5
Input and output

#111 alephreish closed 7 years ago
3
fix deprecated numpy issue

#110 roblanf closed 7 years ago
1
LG4X is a pain

#109 roblanf closed 8 years ago
3
Feature/morph tiger rates

#108 pbfrandsen closed 8 years ago
0
Fix RAxML warning message about GTR+G and GTR+I+G

#107 pbfrandsen closed 8 years ago
2
Discuss: make an ML starting tree the default

#106 roblanf closed 7 years ago
7
Feature/morph

#105 wrightaprilm closed 8 years ago
0
Feature/morph

#104 roblanf closed 8 years ago
0
Discuss: TIGER implementations are confusing

#103 roblanf closed 7 years ago
9
Feature/morph

#102 wrightaprilm closed 8 years ago
0
add morphology to the manual

#101 roblanf closed 8 years ago
1
add references for PF morphology methods

#100 roblanf closed 8 years ago
2
new krmeans algorithm

#99 roblanf closed 8 years ago
0
failing tests

#98 roblanf closed 8 years ago
12
add tests for morphology

#97 roblanf closed 8 years ago
22
check morphology models

#96 roblanf closed 7 years ago
4
implement krmeans

#95 roblanf closed 8 years ago
0
commas removed between sites in MrBayes block

#94 marekborowiec closed 8 years ago
1
min subset size

#93 roblanf closed 8 years ago
1
MrBayes block

#92 roblanf closed 8 years ago
1
Prevent partitionfinder crash when passing in a single partition.

#91 biologyguy closed 8 years ago
5
Catch edge case of single partition in greedy algorithm

#90 biologyguy closed 8 years ago
2