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brettc
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partitionfinder
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
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Forever issue python 2.7 vs 3; missing tables in one and in "3.*" it just make even more issues
#139
StanleeKol
closed
2 years ago
4
ERROR: Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file
#138
xiongqian123456789
opened
3 years ago
2
TIM model
#137
zcalamari
closed
3 years ago
1
Running ~20 loci dataset
#136
aberaslop
opened
4 years ago
1
Error about working directory via
#135
zhounan1356
opened
4 years ago
1
Error 522 to download anaconda
#134
glichtenstein
opened
4 years ago
1
Link to the example dataset in the tutorial is broken
#133
joelnitta
opened
5 years ago
0
PartitionFinderProtein error: Failed to run models ...; not sure why
#132
dongzhang0725
opened
5 years ago
0
user_tree_topology handling
#131
carloliveros
opened
5 years ago
0
--rcluster-max default
#130
carloliveros
closed
5 years ago
1
partitionfinder error on WIN7 32 bit
#129
dongzhang0725
closed
5 years ago
2
Manual in Chinese
#128
roblanf
opened
6 years ago
0
HDF5 error
#127
roblanf
opened
6 years ago
1
Buffer2
#126
roblanf
closed
7 years ago
0
Fix: call scipy.misc.comb with exact=True
#125
hdetering
closed
7 years ago
1
buffer size issue
#124
roblanf
opened
7 years ago
10
remove DUMMY and DUMMY2 models
#123
roblanf
closed
7 years ago
1
Move shell scripts into Makefile
#122
brettc
closed
7 years ago
0
Add license to root.
#121
brettc
closed
7 years ago
1
Manual in md
#120
alephreish
opened
7 years ago
13
chunk tasks for analysis
#119
roblanf
closed
7 years ago
0
some very minor changes
#118
roblanf
closed
7 years ago
0
added a lightweight dependency checker
#117
roblanf
closed
7 years ago
0
Feature/clean tiger
#116
roblanf
closed
7 years ago
0
Feature/ml default tree
#115
roblanf
closed
7 years ago
0
Feature/kmeans manyparts
#114
roblanf
opened
8 years ago
1
Manual in md?
#113
alephreish
closed
7 years ago
6
Script execution
#112
alephreish
closed
7 years ago
5
Input and output
#111
alephreish
closed
7 years ago
3
fix deprecated numpy issue
#110
roblanf
closed
7 years ago
1
LG4X is a pain
#109
roblanf
closed
8 years ago
3
Feature/morph tiger rates
#108
pbfrandsen
closed
8 years ago
0
Fix RAxML warning message about GTR+G and GTR+I+G
#107
pbfrandsen
closed
8 years ago
2
Discuss: make an ML starting tree the default
#106
roblanf
closed
7 years ago
7
Feature/morph
#105
wrightaprilm
closed
8 years ago
0
Feature/morph
#104
roblanf
closed
8 years ago
0
Discuss: TIGER implementations are confusing
#103
roblanf
closed
7 years ago
9
Feature/morph
#102
wrightaprilm
closed
8 years ago
0
add morphology to the manual
#101
roblanf
closed
8 years ago
1
add references for PF morphology methods
#100
roblanf
closed
8 years ago
2
new krmeans algorithm
#99
roblanf
closed
8 years ago
0
failing tests
#98
roblanf
closed
8 years ago
12
add tests for morphology
#97
roblanf
closed
8 years ago
22
check morphology models
#96
roblanf
closed
7 years ago
4
implement krmeans
#95
roblanf
closed
8 years ago
0
commas removed between sites in MrBayes block
#94
marekborowiec
closed
8 years ago
1
min subset size
#93
roblanf
closed
8 years ago
1
MrBayes block
#92
roblanf
closed
8 years ago
1
Prevent partitionfinder crash when passing in a single partition.
#91
biologyguy
closed
8 years ago
5
Catch edge case of single partition in greedy algorithm
#90
biologyguy
closed
8 years ago
2
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