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brettc
/
partitionfinder
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
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finding anaconda python
#89
roblanf
closed
8 years ago
7
2.0.0-pre11 manual mentions non-existant command line flags
#88
yarbelk
closed
8 years ago
1
Package for Debian
#87
kdm9
closed
7 years ago
2
user scheme reporting
#86
roblanf
closed
8 years ago
1
PF2 pre-release 11 is looking for the wrong tree file following estimation of RAxML tree
#85
marekborowiec
closed
8 years ago
5
Feature/ml tree
#84
roblanf
closed
8 years ago
0
compile two versions of RAxML
#83
roblanf
closed
8 years ago
1
Develop
#82
roblanf
closed
8 years ago
0
error in mr bayes block
#81
roblanf
closed
8 years ago
1
Feature/fastercluster
#80
roblanf
closed
8 years ago
0
include category for lie markov models in models.cv
#79
roblanf
closed
8 years ago
0
Feature/merge little subsets
#78
roblanf
closed
8 years ago
0
Feature/mrbayes output
#77
roblanf
closed
8 years ago
0
feature request for csv summary of all schemes
#76
roblanf
closed
8 years ago
1
update manual with clear instructions on anaconda / python version
#75
roblanf
closed
8 years ago
1
Error 2 in alignment parsing
#74
roblanf
closed
8 years ago
3
Error in alignment parsing
#73
roblanf
closed
8 years ago
2
check_state_probs needs some tests
#72
brettc
opened
8 years ago
0
Enable valid character checking in the alignment parser?
#71
brettc
closed
8 years ago
2
Feature/complete alignments
#70
roblanf
closed
9 years ago
0
Add Phyml parsing tests
#69
brettc
closed
8 years ago
1
Feature/greedy speedy
#68
roblanf
closed
9 years ago
0
Outstanding TODO list items (from removed TODO.txt)
#67
brettc
closed
7 years ago
2
Feature/1kite bugfix2
#66
roblanf
closed
9 years ago
0
loading big alignments
#65
roblanf
closed
9 years ago
4
Update minimum versions for python (and anaconda?) in Manual
#64
brettc
closed
9 years ago
1
Feature/1kitebugfix1
#63
roblanf
closed
9 years ago
0
bug in rcluster
#62
roblanf
closed
8 years ago
1
bug in fabricating subsets
#61
roblanf
closed
9 years ago
7
parsing RAxML output
#60
roblanf
closed
9 years ago
5
PF 2.0 dies with an error when trying to join threads
#59
pbfrandsen
closed
9 years ago
3
add --no-bfgs to all RAxML commandlines
#58
roblanf
closed
9 years ago
3
fix tiger_DNA import in kmeans
#57
roblanf
closed
9 years ago
3
Manually check lastest phyml
#56
brettc
closed
9 years ago
3
bump the version number to 2.0.0
#55
roblanf
closed
9 years ago
3
add section to manual on major differences with PF1
#54
roblanf
closed
7 years ago
13
update RAxML to very latest version
#53
roblanf
closed
8 years ago
14
fix rerun tests
#52
roblanf
closed
9 years ago
1
fix full tests with results comparisons
#51
roblanf
closed
9 years ago
1
fix parser tests
#50
roblanf
closed
9 years ago
2
tigger matrix
#49
roblanf
closed
9 years ago
2
Installations on windows network drives seem to fail
#48
brettc
opened
9 years ago
0
PhyML output filename conventions on linux
#47
kgori
closed
9 years ago
2
New model names break tests
#46
brettc
closed
9 years ago
2
checks on bad subsets are not working
#45
roblanf
closed
9 years ago
1
We still call fast_TIGER instead of the new cython tiger implementation for rate calculation
#44
pbfrandsen
closed
9 years ago
22
cython tiger implementation has a flag requiring OS 10.8 or higher
#43
pbfrandsen
closed
7 years ago
3
user schemes seem to be broken
#42
roblanf
closed
9 years ago
2
Add a Gitter chat badge to README.md
#41
gitter-badger
opened
9 years ago
0
add a branchlengths=equal option
#40
roblanf
closed
7 years ago
2
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