issues
search
brettc
/
partitionfinder
PartitionFinder discovers optimal partitioning schemes for DNA sequences.
Other
61
stars
44
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add python3 and package manager
#140
Doubravka
opened
2 weeks ago
1
Forever issue python 2.7 vs 3; missing tables in one and in "3.*" it just make even more issues
#139
StanleeKol
closed
2 years ago
4
ERROR: Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file
#138
xiongqian123456789
opened
3 years ago
2
TIM model
#137
zcalamari
closed
4 years ago
1
Running ~20 loci dataset
#136
aberaslop
opened
4 years ago
1
Error about working directory via
#135
zhounan1356
opened
4 years ago
1
Error 522 to download anaconda
#134
glichtenstein
opened
5 years ago
1
Link to the example dataset in the tutorial is broken
#133
joelnitta
opened
5 years ago
0
PartitionFinderProtein error: Failed to run models ...; not sure why
#132
dongzhang0725
opened
5 years ago
0
user_tree_topology handling
#131
carloliveros
opened
5 years ago
0
--rcluster-max default
#130
carloliveros
closed
5 years ago
1
partitionfinder error on WIN7 32 bit
#129
dongzhang0725
closed
5 years ago
2
Manual in Chinese
#128
roblanf
opened
6 years ago
0
HDF5 error
#127
roblanf
opened
7 years ago
1
Buffer2
#126
roblanf
closed
7 years ago
0
Fix: call scipy.misc.comb with exact=True
#125
hdetering
closed
7 years ago
1
buffer size issue
#124
roblanf
opened
7 years ago
10
remove DUMMY and DUMMY2 models
#123
roblanf
closed
7 years ago
1
Move shell scripts into Makefile
#122
brettc
closed
7 years ago
0
Add license to root.
#121
brettc
closed
7 years ago
1
Manual in md
#120
alephreish
opened
7 years ago
13
chunk tasks for analysis
#119
roblanf
closed
8 years ago
0
some very minor changes
#118
roblanf
closed
8 years ago
0
added a lightweight dependency checker
#117
roblanf
closed
8 years ago
0
Feature/clean tiger
#116
roblanf
closed
8 years ago
0
Feature/ml default tree
#115
roblanf
closed
8 years ago
0
Feature/kmeans manyparts
#114
roblanf
opened
8 years ago
1
Manual in md?
#113
alephreish
closed
8 years ago
6
Script execution
#112
alephreish
closed
8 years ago
5
Input and output
#111
alephreish
closed
8 years ago
3
fix deprecated numpy issue
#110
roblanf
closed
8 years ago
1
LG4X is a pain
#109
roblanf
closed
8 years ago
3
Feature/morph tiger rates
#108
pbfrandsen
closed
8 years ago
0
Fix RAxML warning message about GTR+G and GTR+I+G
#107
pbfrandsen
closed
8 years ago
2
Discuss: make an ML starting tree the default
#106
roblanf
closed
8 years ago
7
Feature/morph
#105
wrightaprilm
closed
8 years ago
0
Feature/morph
#104
roblanf
closed
8 years ago
0
Discuss: TIGER implementations are confusing
#103
roblanf
closed
8 years ago
9
Feature/morph
#102
wrightaprilm
closed
8 years ago
0
add morphology to the manual
#101
roblanf
closed
8 years ago
1
add references for PF morphology methods
#100
roblanf
closed
8 years ago
2
new krmeans algorithm
#99
roblanf
closed
8 years ago
0
failing tests
#98
roblanf
closed
8 years ago
12
add tests for morphology
#97
roblanf
closed
8 years ago
22
check morphology models
#96
roblanf
closed
8 years ago
4
implement krmeans
#95
roblanf
closed
8 years ago
0
commas removed between sites in MrBayes block
#94
marekborowiec
closed
8 years ago
1
min subset size
#93
roblanf
closed
8 years ago
1
MrBayes block
#92
roblanf
closed
8 years ago
1
Prevent partitionfinder crash when passing in a single partition.
#91
biologyguy
closed
8 years ago
5
Next