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So I've got some nice in situ data which I've been using to test the pipeline. It's now working really nicely with no obvious errors which is nice. One area which needs work is the tomograms produced …
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In the newest commit of the relion 4 beta (commit 2fba16), I am encountering a bug in the ReconstructParticleTomo function - when reconstructing the map from the 2D tilt series, the PostProcess job fa…
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**Describe your problem**
After importing raw micrographs and its corresponding coordinates, I tried to extract particles. But error occurs as the issue title. But I tried to read the .star file us…
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#### CTF Estimator
The `estimate_ctf` method (which creates a `CTFEstimator` object internally) takes in a directory containing micrographs and outputs `results`, a list of tuples containing CTF pa…
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Discuss relevance and estimated effort.
Alternatively, we can consider how to shoehorn array data into Relion source.
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Dear Relion users,
I am using Relion3.1.1 to do sub-tomogram averaging. I use 5 mpis, 4 threads, 4 gpus, with additional: - - free_gpu_memory 1000. However, it crashes for each iteration, I have to…
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https://github.com/alisterburt/tomo_preprocessing/blob/217bd46a5ebe7147dd7edd729c6a8e2dc9e76d7d/tomography_preprocessing/import_tilt_series/serialem.py#L103-L105
There's an issue here. rln now rais…
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00027: 2018-08-01 12:13:23.709864
00028: Iteration 1
00029: xmipp_volume_local_sharpening -o Runs/008129_XmippProtLocSharp/extra/sharpenedMap_1.mrc --resolution_map Runs/008162_ProtImport…
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Hey - would you consider relicensing this repo under BSD-3? Ideally I would prefer it if all of the teamtomo repos had the same license, didn't realise this was different
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Hi Euan,
When i try to run relion_align_tilt_series IMOD:fiducials --help (from yours and Alister's tomo_preprocessing package). I see the following error.
relion_tomo_align_tilt_series IMOD --h…