-
### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [x] (o…
-
If incompatible versions of `pygeos`, `geopandas` and `shapely` are installed one may encounter bugs with `geopandas` or reduced performance. In an extreme case I just saw `sjoin` fail with the follow…
-
### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [X] (o…
-
Hey awesome people,
looking at https://spatialdata.scverse.org/en/latest/tutorials/notebooks/notebooks.html I would suggest to reorder the tutorials so that part I and part II are the first noteboo…
-
Reported here: https://github.com/scverse/spatialdata-plot/issues/230.
Though it was not a problem anymore; I'll look into this.
-
**Describe the bug**
Getting the following error when trying to read a zarr file
```
/hpc/projects/hca_integration/workspace/hca_pipelines/workflow/metrics/.snakemake/conda/152006085908115996d5d9…
-
https://github.com/scverse/scvi-tools/blob/95f2e1d2fa921c6433a04e257d844280ba0c25e5/scvi/model/_multivi.py#L621
library_size is referenced in the docstring for the function but not in the list of a…
-
### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (op…
hl324 updated
6 months ago
-
See: https://github.com/scverse/scanpy/issues/2865
-
Im trying to find DEGs between the leiden clusters use ov.single.cosg
Here is a simple example.
`adata`
```
AnnData object with n_obs × n_vars = 117399 × 21054
obs: 'sample', 'n_genes_by_co…