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@xiaoyeye great tool! when I run analysis get error like this.
The adata file is a subset of a big file and then merge with the velocyto file.
```
(TFvelo_env) dengzhen@dengzhen-Super-Server:~/co…
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Hello again!
Getting the following issue running R methods:
```
Error in `[[ ScaleData.Seurat
Execution halted
```
Example errors:
```
Error in rule integration_run_r:
jobid: 44
…
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### Stories:
Story 1. As a taxonomy editor, I want my taxonomy to be linked to the cells being annotated in order that my annotations can be synchronised with the a representation of data about the…
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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
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Hi,
It is a fantastic method for analyzing spatial transcriptomics!
I tried to cluster DLPFC samples with SCGDL following the tutorial you present. I found the outcomes are quite different from …
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Thanks for developing this interesting program. While I am trying to run the algo, after training it fails giving the following:
88 if init_cluster is not None:
89 cluster_centers = comp…
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Hello, I'm looking for guidelines on downloading a full dataset from gEAR. I've downloaded one dataset from the 'Gene Expression Search' page, but I haven't been able to access the others I'm looking…
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Hi,
Thank you all the developers of `scIB` for the great package and also to suggest useful metrics to compare the performance of integration methods.
>WARNING: You may want to skip to the end…
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Hi @dannda,
While running the pipeline using the updated code, I am again getting error. It seems like the scanpy package is not installed correctly in the singularity image and it is…
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Computing content hash for manifest took over 30 seconds. A reindex was not occurring at this time.
[CloudWatch logs (anvilprod)](https://us-east-1.console.aws.amazon.com/cloudwatch/home?region=us-…