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Hello everybody,
I have a small issue which is probably just a rookie mistake. I have a dataset of vaginal microbiota; Illumina HiSeq sequencing was performed, I have run the Dada2 pipeline, and m…
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relevant to #309
I've been working on annotating catlases. In this use case, I built a "metapangenome" graph. I did a genome query (_R. gnavus_) in 605 gut microbiome metagenomes, and then combined…
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E.g. for breast, colorectal, and ovarian, add "mass spectrometry based proteomics data from CPTAC [citation]."
jjgao updated
2 years ago
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# Scenario 4: Microbial Regnets
The human gut microbiome is an increasingly important area of study for multiple infectious diseases and chronic conditions, including COVID-19 and long COVID. Howev…
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A gut microbiome signature for HIV and metabolic dysfunction-associated steatotic liver disease
https://pubmed.ncbi.nlm.nih.gov/38162648/
I chose this particular article because its HIV-related. H…
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Hair Microbiome Diversity within and across Primate Species -- Catherine Kitrinos et al. -- ASM Journals
https://journals.asm.org/doi/10.1128/msystems.00478-22
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![upsetr](https://github.com/user-attachments/assets/d279210e-4f0d-47ed-9be5-56a190de255d)
Sorry for this question, but could someone help me understand this graph?
P.S.: IDs with "_REF" are ref…
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Large impacts of small methane fluxes on carbon isotope values of soil respiration https://www.sciencedirect.com/science/article/abs/pii/S0038071718302013
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https://github.com/microbiome/OMA/pull/562
The library call in OMA should be harmonized. All should be in format library(mia).
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## 🐛 Describe the Bug
Entering this text into the "Results and Conclusion Summary" of the data submission form causes it to crash:
> Emerging evidence implicates microbiome involvement in the de…