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Currently, we can do the following:
```
>>> for sample in record.samples:
... print sample['GT']
'1|2'
'2|1'
'2/2'
```
It would be nice to have a built in method that looks at the ref and alt al…
arq5x updated
12 years ago
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This is likely owing to my naivete, but I am working on another tool that depends upon PyVcf. As such, in my `setup.py` I have:
```
install_requires=['numpy', 'pyparsing', 'pysam', 'pyvcf>=0.4.0'],
…
arq5x updated
12 years ago
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Updating to biopython-1.52, which was released September 22, 2009. Main improvements were to alignment and sequence file conversion, population genetics statistics, and the Bio.SeqIO.indexed_dict()…