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This wdl throws an error:
```
scatter (unmapped_bam in flowcell_unmapped_bams) {
String base_name = sub(sub(unmapped_bam, "gs://.*/",""), ".unmapped.bam$", "")
call CollectQualityYieldMetrics {
…
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e.g., NormalizeSomaticReadCounts.mem, CalculateTargetCoverage.transform? Or I might just be running the scripts incorrectly. @asmirnov239 can we discuss when you're back?
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Trying to run a wdl script with cromwell 0.19 jar. I've been getting this error periodically, but as I make changes to the wdl, these disappear or come back. Unfortunately, this one is back and I ca…
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I have a workflow containing scatters that worked in 5155e6f and earlier versions e.g. tags/22,23 but doesn't work anymore with 340a5cf.
[Edited]
see [comment below](https://github.com/broadinstitut…
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With #388 we are giving a status to projects and need to also improve the visualization.
1. re-style its header to be closer to the task header and use 2 colors: light blue for normal and green for c…
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To continue discussion from #92
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Specific issue: `TumorWholeGenomeCoverage` does not appear to start after `TumorCalculateTargetCoverage` has completed successfully.
- local backend
- server mode
- call caching is enabled
- dev snaps…
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The assignment of these variables into each task's descriptor naturally fits in MaterializeWorkflowDescriptorActor rather than relying on the backends to re-implement it.
Re-enable test `"assign defa…
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When running the following example wdl task:
```
task SplitGvcfTouch {
File interval_list
String sample_name
command >>
runtime {
docker: "broadinstitute/genomes-in-the-cloud:1.1044_wit…
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Currently, the repo supports only polyglot output. It does do this very fast (kudos)!!
The output currently returns the moves from any position and the weights. For a tournament chess player, it is…