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- [x] Replace scopes in this repo
- [x] `delete:Files` --> `delete:SimulationRuns`
- [x] `delete:Logs` --> `delete:SimulationRuns`
- [x] `delete:Metadata` --> `delete:SimulationRuns`
- [x]…
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I made a metabolic model and now I have to simulate the growth by using defined media from literature.
I am using following command from COBRA
medium = model.medium
medium["EX_o2_e"] = 0.0
model.…
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https://metabolicatlas.org/explore/Human-GEM/gem-browser/metabolite/MAM00154r
MAM00154r is
(Glc)3 (GlcNAc)2 (Man)9 (PP-Dol)1
and should have a xref to CHEBI:53019 (glycan G00008, synonym (Glc)…
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how to create new dataset for testing?
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Dear authors:
I have downloaded the universal model data in JSON format from the BIGG website ([http://bigg.ucsd.edu/data_access]), and the model was loaded with the following code: `model = cobra…
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**URL**: https://www.voot.com/live/bigg-boss-24-hrs-live-channel/998775
**Browser / Version**: Firefox iOS 38.1
**Operating System**: iOS 14.8
**Tested Another Browser**: Yes Opera
**Problem t…
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```
function get_output_from_castle(Castle, output_dir)
%GET_OUTPUT_FROM_CASTLE generates output files for mat object Castle
% Detailed explanation goes here
% Input:
% Castle : The structu…
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The `latex-document.cwl` file compiled into TeXstudio includes commands `\bigskip`, `\medskip` and `\smallskip` but on my Debian 11 system with TeXstudio 4.0.1, none of these show up as autocomplete o…
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Dear Daniel,
In the CarveMe tutorial, it is written:
"$ carve genome.faa --soft data.tsv
Where data.tsv is a tab-separated file with two columns, the reaction identifiers and the respective values.…
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9.999% of the pack zip is the slideshow images
bloated!!!1!!1!