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## Description
When building the docker container, an error occurs trying to fetch `jsonld-java`.
A random sampling of old commits (going back as far as [79383bc](https://github.com/common-workf…
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Hi Brad,
I hope you're well - long time no see.
I was following https://bcbio-nextgen.readthedocs.io/en/latest/contents/cloud.html#docs-cloud-gcp for testing bcbio_vm on GCP. I did the minimal bc…
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VAFs are another output of the detect_variants workflow that are currently missing. These can be calculated from bam-readcount output, see #127. However, annotating the VCF with new VAFs has been a lo…
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We can use `run_test.sh` to check the coverage of CWL specification for the given platform.
Here is an example of the output:
```
4 tests passed, 78 failures, 47 unsupported features
```
This i…
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I am trying to create GIST with the following Object.
Getting error but it was working fine in previous versions.
```
private GIST_JSON_EMPTY: GitHubApi.GistsCreateParams = {
description: "…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/hubentu/Rcwl
Confirm the following by editing eac…
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When using relative path-based imports in a WDL, and imported WDL which also imports a WDL does not look in the right places for relative imports.
For example, given the directory structure:
```
im…
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Hello,
After upgrading to the latest development version, the logs and joint VCF file generation don't seem to work properly anymore. Debug messages don't get printed anymore (neither on stdout, no…
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Hey, is there a library or parser which can be called from applications written in c++?