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I'm trying to install sra tools 3.0.6 to a micromamba environemnt, however I'm getting the following error message:
error libmamba Could not solve for environment specs
The following package …
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When I `prefetch -t http -O ./ -X 1T --ngc key.ngc SRRXXXXXX -vvvvv`
I got:
```log
prefetch.3.0.6: heartbeat = 60000 Milliseconds
prefetch.3.0.6: Seeding the random number generator
prefetch.…
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“Current preference is set to retrieve SRA Normalized Format files with full base quality scores.” displayed and then prefetch finished directly.
Who knows what's the wrong?
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G:\Utils\sratoolkit.3.0.6-win64\bin>fasterq-dump.exe SRR6377819.sra --fasta -p -e 12 -O G:\DNA\Kazan …
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### Data Owner Name
National Library of Medicine (NLM)
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://www.ncbi.nlm.nih.gov/sra…
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https://github.com/ncbi/sra-tools/wiki/02.-Installing-SRA-Toolkit
SRA Toolkit for my RPCI Visualization Desktop
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Dear SRA team,
Could you please clarify this part of `fasterq-dump` manual:
> An accession is not a file, it is a container of files. Depending in the data submitted to NCBI, the container will…
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So i m running a pipeline where I have multiple steps the sra tool kit fails at the make_fastq where a given SRR id passed as input to the prefetch, then vdb-validate and then finally fasterq-dump. So…
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Hello,
I have downloaded the sra-toolkit from Anaconda (https://anaconda.org/bioconda/sra-tools) and downloaded an .sra file using the command: `prefetch SRR20073591`.
The .sra file is located her…
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Hi Marc,
I want to reproduce the results from your paper. However, the download scripts seem incomplete. The download_verm.sh script creates fast5 and fastq directories, but doesn't move any files …