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How to deploy nnUNet with torch serve , is there any tutorials currently?
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Hi! I installed nnUNet and try to train a model. I have a macBook pro with a M3 max chip. I can train the model with the CPU, I tried to train it with the mps device but I get this:
```
torch._dynam…
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I just noticed I put the final checkpoints in the r20231017a release. We should fix this as we now know best_checkpoints usually perform better on our datasets.
See nnunet retraining master issue h…
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In this issue, I detail the steps to training several nnUNet to automatically segment MS lesions in the SC. More specifically I trained:
- single class nnUNet: at inference : 1 input (image), 1 outp…
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(nnunet2) [xxx@bme_login2 nnUNet]$ pip install -e .
Obtaining file:///xxx/data/xxx/nnUNet
Installing build dependencies ... done
Checking if build backend supports build_editable ... done
Ge…
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I would like to used the data processed and splitted by the nnUNet for other networks I have, so I have been digging into the DataLoader code of nnUNet project. I stumbled upon the function `crop_to_n…
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Hello, I would like to ask how nnUNet adjusts the number of concurrent processes and threads during training. Are there any relevant environment variables? I also want to know the meaning of OMP_NUM_T…
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Hello,
I am running Python 3.10.12 and nnunetv2 on Colab. Preprocess and verify runs without issues:
```shell
!nnUNetv2_plan_and_preprocess -d 20 --verify_dataset_integrity -c 2d
```
But d…
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Hello,
I'm a newbie, what's the problem when I encounter this situation? Is it because I don't have enough data, or do I need to adjust some parameters? I probably have more than 100 pieces of data.I…
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I've tested the nnUNetTrainer__nnUNetPlans__3d_fullres dataset that was suggested in the tutorial on Windows11 with an NVIDIA RTX 3090 (24GB) and the segmentation failed.
First the SlicerNnUnet mod…