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A list of dataset files we believe are missing. Will be updated as they're reported / found. Feel free to comment to report additional ones.
- [ ] 108, Waveform Database Generator (Version 2)
V…
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Hi @nextgenusfs --
Thanks for writing this incredible software! I've been experimenting with funannotate for the past week or so, and have it running on some new electric fish genomes. I've been …
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> Convolutional neural networks (CNNs) have been shown to perform exceptionally well in a variety of tasks, including biological sequence classification. Available implementations, however, are usuall…
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I am running SpeedPPI on GPU nodes. But some of the jobs would run out of memory even with 250GB memory. The error says `RESOURCE_EXHAUSTED: Out of memory while trying to allocate 16508718128 bytes.` …
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The human reference proteome contains 30 selenoproteins, that is proteins that have a selenocysteine (the 21st amino acid that is incorporated in human proteins). It is unclear, however, how PureseqTM…
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This Ensembl pipeline is probably one of the largest sources of incorrect IEA annotation.
One major issue that could be fixed is that the relationships appear to be ignored.
So in this case…
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Configuration file: db_main.toml
Description: miRDB is an online database for miRNA target prediction and functional annotations.
```toml
[db_mirdb]
source_url = "http://mirdb.org/download/miRDB…
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Hello,
I am annotating some vertebrate genomes using BRAKER3. I got quite good results on the first genome, but now with a related species' genome I am running into the troubles below. I am using pro…
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Hi,
Suppose I have a Peptide `IQGLSFDIYEALL `which I want to dock (create a heterocomplex?)
to a protein `QEEACAKNFGAFCVFVGIVRKEDN`
Is this syntax correct to run with [AlphaFold2_advanced](htt…
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Hi
I followed the instructions and successfully get predictions for single sequence or a fasta file of multiple sequences.
However, when I try to make predictions for structures, I get the following…