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I'm trying 'gadget.forward' on a 3 species, 4 fleets model with some default values as follows:
`fwd
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The following Gillespie simulation produces incorrect results
import tellurium as te
import random
r = te.loada("""
J0: TetR->; kTbye \* TetR
TetR = 1; // Note one molecule
kTbye = 0.1;
…
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Hi Jean,
It would be cool if after making a simulation package I could set the value of some of the variables I have in the model (that I'm using to specify the initial number of copies of some agent…
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This is the corrently the case for models with markov shocks, not with continuous shocks.
albop updated
8 years ago
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In the last a couple of weeks, about 70% of my coupled simulations on edison died in the middle of creating restart files (some components created restart files successfully). This failure seems occur…
tangq updated
8 years ago
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Hey @tcollett - thinking about #6 but also more generally about interpreting BlueRings outputs, I think it would be helpful to provide access to the `LensPops` catalog from which the training set wil…
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Severe disease and deaths: to obtain rates from small simulations it should be possible to sum the probabilities of events to obtain approximations to the numbers of events with much less stochastic v…
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Hi,
with `variable_step_size=FALSE` the GillespieIntegrator does not produce RCLL-Paths as in GillespieIntegrator.cpp
Line 236 `while (t < tf)`
allows the code to update the chemical-species even if
…
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I have run a simulation using the parallel computation (doMC package) on a cloud server (Intel Xeon CPU,Cores:16), however, it haven't be finished for nearly four days. The dataset in the simulation …
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This is to discuss the callback interface separate from the clutter of #5. In there we started discussing a little about coming up with a common callback interface, but didn't get very far.