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Hi,
I stumbled into this error this morning and I'm not sure how to proceed.
```
==> MERGE ORPHANS.
computeErrorProfiles()-- Computing error profiles for 61277 tigs, with 16 threads.
ERROR: stdDe…
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1. A summary of the assembly:
- unitigs: n50, min, ave, max, total, length histogram
- read stats: min, ave, max, total, X coverage, length histogram
- overlaps: (hopefully done)
2. Outputs:…
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Hi,
I can't seem to get the `sample_dataset` to assemble. I keep hitting an assert early into the assembly process:
```
./sample_dataset/assemble.sh
Trans-ABySS 1.5.4
CMD: /src/transabyss/transabys…
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Hi,
Sorry, not sure if this is the issue with the program or just incorrect compiling, but I have problem running the `canu`
AFAIK, the installation went smoothly without errors and I have enough RAM …
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```
❯❯❯ bcalm -in pe400.in -out hsapiens-unitigs -k k64 -abundance 5 -nb-cores 32
terminate called after throwing an instance of 'std::bad_array_new_length'
what(): std::bad_array_new_length
Aborte…
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(From issue #19)
Break the consensus outputs into three categories:
1. Unassembled crud (singletons and low-coverage near-singletons)
2. Secondary unitigs (unpopped bubbles)
3. Unitigs
Filtering is …
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`canu --version`
`Canu v1.0 (+676 commits) r7833 3320a316d9db860645d2a2edaad00cf789edfa4a.`
`cat unitigging/4-unitigger/unitigger.err:`
```
Graph error threshold = 0.105 (10.500%)
Max error thr…
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Bogart computes repeat boundaries and possibly splits repeats on those boundaries. If a split occurs, the reads/unitigs that result are not marked as being from a repeat region, nor are the unsplit r…
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At overlap error adjustment I am getting this error in almost 35 Jobs, however 7 job completed successfully
```
Initializing.
Opening gkpStore '/home/scbbcluster/nitesh_mpi/pacbio_assembly/canu-1…
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Hi everyone !
I'm trying to use Canu in order to assemble the D. suzukii genome. As flies genome are genes dense (genes are very close to each others), and as the D. suzukii species contains a lot of…