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## Checklist before submitting the issue:
- [x] The issue is strongly related to the MiXCR software
- [x] The issue can be reproduced with [the most recent version](https://github.com/milaborato…
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This is the introduction to the dada2 method and an explanation and sanity check of the dereplication. Let me know what you think!
https://github.com/jordenrabasco/Long_read_processing_tutorial/blo…
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See a great example here: [https://github.com/isugifNF/blast/blob/master/main.nf](https://github.com/isugifNF/blast/blob/master/main.nf).
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Hi,
The error "ZeroDivisionError: division by zero" is raised in Collapsinator.py, line 766, in collapsinator
counts['pc_uniq_dcr_kept'] = ( counts['number_output_unique_dcrs'] / counts['numb…
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I have a fastq file with 1.7 million reads of 75 bps, and 28 different barcodes. My command:
``fastq-multx -l barcodes.txt all_samples.fastq -e -o %.fq -x"
Part of my barcode file: barcodes.txt:
…
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### Description of the bug
The pipeline was running correctly until it had to retrieve a consensus fasta file with Nextclade. The parameter seems to be missing and I do not know how to add it when ru…
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- primers initially
- amplicons would be a bonus
bede updated
2 months ago
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## Overview
We need a home for programmatic interaction with VKC lab data, including data stored on Airtable, AWS, and physical hard drives attached to lab computers like `hopper` and `ada`. This i…
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[Chen G, Yang X, Ko A, Sun X, Gao M, Zhang Y, Shi A, Mariuzza RA, Weng NP. Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8+ TCR Repertoires to Immunodominant Viral Antige…