-
Sean brought this up in our last meeting.
Currently, the pipeline waits until the very end of the process to save its outputs and commit them to the repo. On one hand, this can be a good thing beca…
-
I've asked `what is the temperature in the bathroom` and it comes back with `Temperature is`
But asking `what is the bathroom temperature` works with `Bathroom temperature is 17.9 °C`
The proble…
-
Please let me know if this is not the correct place or way to start this discussion.
I have some code for a wrapper to an estimator (transformer or predictor) that quickly saves the object _and_ th…
-
Hi,
The following error occurs when I used f5c to call methylation and I wonder how this can be resolved. The script as f5c call-methylation -t 40 -r pass.fq.gz -b psss.bam -g genome.chr.fa --pore r…
-
@XX-Yin and @KanghoonJ have asked about using the aind-watchdog service to upload data to AWS. This brings up questions about how we want upload and processing to work
- [ ] does aind-watchdog uplo…
-
### The problem
In the Painless scripting language it is an error for the result of an `if` condition to be `null`. This matches Java but differs from many other languages, in which `null` is falsy.
…
-
Include
- Correlation matrix
- Mutual Information
- @AdamAker BARS stuff
Generate a report for a *Dataset Overview*
-
- [ ] Adapt the distilbert data parallel pipeline to function based on the available machine.
-
Improve the data pipeline such that it can ingest raw TIDES data from external data sources, parse the data and transform the data into mart tables to use for various analyses.
-
### Describe the problem
As discussed, we want to shift away from the catalogs repo being our source of truth so we can include more of the dynamic info that comes from our data pipeline.
### Propo…