hasindu2008 f5c issues - Githubissues

hasindu2008 / f5c

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

https://hasindu2008.github.io/f5c/docs/overview

MIT License

144 stars 26 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

f5c index error kseq_read

#188 SamuelErnestRoss opened 5 hours ago
0
Multiple events corresponding to the same read at one position

#187 lubitelpospat opened 4 days ago
4
Switching from nanopolish to f5c, worse m6a-callers performance/different output files

#186 BrendanBeahan closed 1 week ago
3
f5c about kernel:NMI watchdog: BUG: soft lockup

#185 kir1to455 opened 3 weeks ago
7
prepare for dRNAseq data preprocessing

#184 Seongmin-Jang-1165 closed 2 weeks ago
6
The call-methylation step error

#183 HW-Superior opened 3 weeks ago
8
Large amount of "skipped secondary"?

#182 NStrowbridge opened 1 month ago
1
Some issues when using 'f5c eventalign -- pore rna004'

#181 llaomer closed 1 month ago
15
Resquiggle TSV formatting issue: kmer base with "." as end_raw_idx includes additional tab

#180 williamphu opened 1 month ago
1
Eventalign fails for most reads fail with "no alignment" or "not calibrated"

#179 mzdravkov opened 2 months ago
10
The issue of methylation calling failure in the het deletion sample.

#178 edeuse closed 2 months ago
2
Assertion failed in align.c while running f5c eventalign on Nanopore Direct RNAseq

#177 Euchiz closed 2 months ago
3
no alignment, bad reads error

#176 edeuse closed 2 months ago
2
obtaining the read ID in the eventalign file

#175 peterthorpe5 closed 2 months ago
8
Clarification on reference type for eventalign

#174 Euchiz closed 2 months ago
2
using phased bam

#173 edeuse closed 2 months ago
2
'call-methylation' error 'malloc(): invalid size'

#172 edeuse closed 3 months ago
6
Collapse2

#171 hasindu2008 closed 3 months ago
0
Can f5c eventalign output base calling sequences ?

#170 kir1to455 opened 4 months ago
28
Some questions about f5c

#169 peiyihe closed 4 months ago
2
Error concerning conflict of run-ids in multi-fast5 file

#168 sachingadakh closed 5 months ago
0
Error during eventalign: Read ID 'X' was not found. Slow5 record will be skipped.

#167 tjprins closed 5 months ago
5
f5c eventalign out of memory message

#166 nickst85 closed 3 months ago
11
get 5mer output with R10 data

#165 lyj95618 closed 5 months ago
4
No alignments after call methylation

#164 CountBorgula closed 5 months ago
6
Memory problem of f5c v1.4

#163 JeremyQuo closed 5 months ago
11
methylation calling is not supported for RNA data

#162 yao-idol closed 5 months ago
2
slow5 index create error during eventalign

#161 lyj95618 closed 5 months ago
11
RNA004 9-mer model

#160 zhongzhd closed 5 months ago
2
f5C Resquiggle Memory Problems

#159 miles-jon closed 5 months ago
7
When doing f5c call-methylation, the quality of dorado basecaller's reads was significantly lower than that of guppy basecaller's reads

#158 happier21 closed 5 months ago
4
Difference between f5c eventalign and resquiggle, event segmentation with resquiggle

#157 maximilianmordig closed 3 months ago
5
add assertion to count signal samples and fix wrong insertion at the begnning of ss string

#156 hiruna72 closed 9 months ago
1
Rna004

#155 hasindu2008 closed 9 months ago
0
f5c error for m6anet

#154 josiegleeson closed 7 months ago
13
f5c index : num reads and num reads with path to fast5 don't match

#153 sachingadakh closed 9 months ago
6
Using nanopolish polyA with f5c index error

#152 kir1to455 closed 9 months ago
4
Some questions about f5c

#151 JeremyQuo closed 10 months ago
14
f5c support to event align for R10.4.1 RNA data?

#150 kir1to455 closed 10 months ago
2
How to interpret the 'NNNNN' in the 'model_kmer' column of eventalign?

#149 zhongzhd closed 7 months ago
1
Update README.md

#148 hasindu2008 closed 11 months ago
0
Update README.md

#147 hasindu2008 closed 11 months ago
0
Bad fast5 warning . How to I fix ? code I run and output attached ( r10 chemistry)

#146 senukobla closed 5 months ago
11
Can f5c eventalign using nanopolish index?

#145 kir1to455 closed 12 months ago
11
f5C eventalign with Guppy-called base modifications

#144 ddubocan closed 12 months ago
6
question about methylation detection

#143 huawen-poppy closed 1 year ago
8
Generation of r9.4_450bps.cpg.6mer.template.model

#142 ShelaLJJ closed 12 months ago
4
No GpC methylation calling?

#141 yangxin-9 closed 1 year ago
4
Other kmer models for R10.

#140 andreyurch closed 12 months ago
7
pod5 support instead of fast5

#139 jolespin closed 7 months ago
6