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Hello @falexwolf and @theislab
This issue is for discussing the wrapper for your trajectory inference method, PAGA, which we wrapped for our benchmarking study ([10.1101/276907](https://doi.org/10.11…
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Are Louvain clustering results supposed to be reproducible? I ran the clustering on the 1.3 mln dataset, exactly following the code provided here https://github.com/theislab/scanpy_usage/blob/master/1…
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Does this implementation support a network where cross connections between nodes across layers exist? (Example connections like Node1 of Layer1 connected to Node 2 of Layer2) . Although the formula fo…
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Implement community detection with Louvain method.
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Hello!
I found an odd bug where computing `sc.pp.neighbors()` with `metric='jaccard'` results in random cluster assignments coming out of `sc.tl.louvain()`. Running with the `euclidean` distance me…
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I've been following the pbmc tutorial on filtering and clustering my data, but after doing RunPCA and using ElbowPlot to pick my PCs, I can't get `FindClusters` to work. It displays its progress, reac…
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@MridulS can you please build a conda-forge package for python-louvain? Its presence as a pip-installed package is causing some issues.
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Hi, vtraag:
Thanks for your works.
I have a little question that i just get three partitions about my data. So, I want to change the number of clustering output of the louvain methods. Is there any …
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http://stackoverflow.com/questions/9490003/web-based-large-scale-graph-drawing-library
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It could be useful to have the method cluster_louvain also in the Python version.
Thanks!